Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272388g00002 ATGGGGAAGAAGAAGCAGAAGGATAAGATTGTTCTCCCACCGGACCTCCCTCCGGAGATTCCTGATGACGAGGTCGAGGTCTCCGACGAGGACCTCCAATTCGTCAATGAGAATCGCGGTTACGCTTCCTTATTCTCCACCCTTGACACACAATCAATCACCAAGCATGTTACTCGAGTTGCTGATGCTAAAGATGATGCTTTGGAGAAACTTTATGAGAAACGGCTGCGAAAGAATGCTCTCAAGAAGGAAAAAGAAGAAACAGGAATACAGGTTGACCGAGTTGATGCTCTTCCAATTAAGTCTTTGGATGGACAACTCTATTACCGGACAGCTGCAAAGGCAGAATCACAAAATGGTCCAAGTGAAGAGGAAACAGGAGAGGATGGAAATGATGACAAAGGTCTGGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAGCTTAAGAAGTTGAGAAAGGAGGGGAAAAAACAAGGAAAAGAGGTGCCAAAAGAAGAAGTGGAACAAACACCACAAGCTGCAGTACTGGCTGAGGTAAAAGAAGATCTTACAACTGAGGAGGCTTTTGAATCTAAGAAGAGTAAGCTTGCAGAGTTGGGAAATGCCTTACTTACAGACCCTGAGTCCAATATTAAATTTCTGAAGGATATGCTACAGATATGTAGAGATAATGATCCTACCATGGTTAAACTTGGACTTTTGTCACTCTTGGCTGTATTTAAAGATATTGTCCCTGGCTATCGAATAAGGCTTCCTACTGAGAAAGAACTGGAAATGAAGGTTTCAAAGACCGTGAGAAAGATGCGCTATTATGAATCAACTCTACTTTCTGTATACAAGGGATATCTGCAAAGGCTGATGTACTTAGAAAAGAAGCCTTTATTTCAACTTGTAGCAGTTCGTTGTATTTGTACATTGCTTGATGCACATCCCCATTTCAACTTTAAGGAAAACCTGTTGGATGCTACTGTCAGAAACATAAGCTCTACTAATGAGTCCATAAGGAAACTTTGTTGTTCTACAGTTAAATCACTGTTTACAAATGAGGGTAAACATGGCGGTGGGAGTACTGTAGAGGCTGTTCGGTTGATTGCCGATCTTGTAAAGGCTAATAATTGTCAGTTGCATCCTGATTCCATTGAGGTATTTTTGTCTCTTTCATTTGATGAGGATCTTGGGAAGTCTGAGAAGAAAGATGAGGATCAGAAATTTAAGAACAAGAAAAATAAGAAGAGAAAGAACATGGAGGGATCAAATCAGTTGCCAGATAATGACCGAAAGAGAAGTAGGCATGAATCGATCTCTAAGACAAAAGAGGAGGTTGAAGCTGAGTACAAGGCTGCATCTTTTACCCTAGATGTTGCAGAGAGGAGACAAATGCAATCTGAAACACTCTCTGCCGTGTTTGAGACATATTTTCGCATTTTGAAGCACACAATGCATTCTATAGCAACCAGGCCTGAAGTAAATACTGGGGCATTATCCTCTACGGTGGAACCCCACCCATTGTTTGCTCCTTGTCTTAAAGGACTGGGAAAGTTTTCACATTTGATTGACCTTGACTTCATGGGGGACCTAATGAACCATCTCAAAGTTCTTGCTTCTGGCGGTAGCAATTCAGGCAACAGTTCTGAGAAGTGTCCTAAAGTTTTGACCGTGACCGAACGTCTCCAATGTTGCATAGTTGCCTTTAAAGTGATGAGGAATAATCTTGATGCTCTGAATGTTGATTTGCAAGACTTCTTCATCCATCTTTACAATCTTATCATGGAATACAGGCCTGGAAGAGATCAAGGAGAGGTCTTAGCAGAAGCTCTGAAGATAATGTTGTGTGAAGATAAGCAACATGACATGCAAAAGACTGCTGCATTCATAAAACGTTTGGCTACATTGTCGCTGTGTTATGGTTCTGCTGAGTCCATGGCTGCATTGGTCACAGTAAAGCATCTCCTTCAAAAGAATGTGAAGTGCAGAAATCTGTTGGAAAATGACACTGGAGGGGGCTCAGTTTCTGGGACAATTCCAAAATATCTACCATATTCCACCGATCCGAATTTAAGTGGAGCTCTTGCCTCAGTGCTTTGGGAACTCAATCTGTTGTCCAAGCATTATCATCCTTCTATATCAACAATGGCTGCAGGCATATCAACCATGAGTGTTGCACAGAACCAAGTCATTCTCTCTAAAACCTCTCCTACACAAGCTTTAAAGGAAATGTCTCTTGATCAGGAATTAACTTTCCCACAACATAATGGCACTATAAAATTGAATAACAAGAAGAGAAGAACCAATGGTCCTGCAATATCACCATCCACTAGTTCTACATCAGTCACATCAAGTTCATTTGATGAGGACGAGTTGCGCAAGAAACTTGGTTCCCATTTCACGCTTCTTCGCGACATTAGGGAGAATGGAAGGTTGAGAAAGGAGTTGGATAAGACTACCCTATCACTACAGCTATATGAGCAATATAAGAAACAAAAGCAAAGATCAAAACCGAAAAAGAAAGCCATTGCTTAG 2520 0.4139 MGKKKQKDKIVLPPDLPPEIPDDEVEVSDEDLQFVNENRGYASLFSTLDTQSITKHVTRVADAKDDALEKLYEKRLRKNALKKEKEETGIQVDRVDALPIKSLDGQLYYRTAAKAESQNGPSEEETGEDGNDDKGLVKLTKAEKRAKLKKLRKEGKKQGKEVPKEEVEQTPQAAVLAEVKEDLTTEEAFESKKSKLAELGNALLTDPESNIKFLKDMLQICRDNDPTMVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSVYKGYLQRLMYLEKKPLFQLVAVRCICTLLDAHPHFNFKENLLDATVRNISSTNESIRKLCCSTVKSLFTNEGKHGGGSTVEAVRLIADLVKANNCQLHPDSIEVFLSLSFDEDLGKSEKKDEDQKFKNKKNKKRKNMEGSNQLPDNDRKRSRHESISKTKEEVEAEYKAASFTLDVAERRQMQSETLSAVFETYFRILKHTMHSIATRPEVNTGALSSTVEPHPLFAPCLKGLGKFSHLIDLDFMGDLMNHLKVLASGGSNSGNSSEKCPKVLTVTERLQCCIVAFKVMRNNLDALNVDLQDFFIHLYNLIMEYRPGRDQGEVLAEALKIMLCEDKQHDMQKTAAFIKRLATLSLCYGSAESMAALVTVKHLLQKNVKCRNLLENDTGGGSVSGTIPKYLPYSTDPNLSGALASVLWELNLLSKHYHPSISTMAAGISTMSVAQNQVILSKTSPTQALKEMSLDQELTFPQHNGTIKLNNKKRRTNGPAISPSTSSTSVTSSSFDEDELRKKLGSHFTLLRDIRENGRLRKELDKTTLSLQLYEQYKKQKQRSKPKKKAIA 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272388g00002 839 Pfam CBF/Mak21 family 557 712 IPR005612 -
Stsc272388g00002 839 SUPERFAMILY ARM repeat 212 637 IPR016024 -
Stsc272388g00002 839 Coils Coil 424 458 - -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 1 22 - -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 755 781 - -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 113 169 - -
Stsc272388g00002 839 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 822 IPR016903 -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 755 783 - -
Stsc272388g00002 839 Pfam Nucleolar complex-associated protein 192 282 IPR011501 -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 397 440 - -
Stsc272388g00002 839 MobiDBLite consensus disorder prediction 413 440 - -
Stsc272388g00002 839 PIRSF Noc3 1 836 IPR016903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272388g00002 Stsc-Chr272388 7570 14022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272388g00002 1 811 Core DNA Replication Machinery Family AT1G79150 57.403 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272388g00002 K14834 - gmx:100776136 1216.45