Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272387g00002 ATGGGTCGCCATTCTTGCTGTGTAAAGCAGAAACTGAGGAAAGGTTTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACAAGGTTCGGTGTTGGTTGCTGGAGCTCCGTTCCAAAACTAGCTGGGCTGCAAAGATGCGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTTAGGCCTGATTTAAAGAGAGGGATGTTCTCCCAGCAAGAAGAGGATCTTATAATCAGTCTCCATGAAATCCTCGGAAACAGGTGGGCTCAGATAGCAGCACAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTCTGGAATTCATGTTTGAAAAAGAAGCTAGTGAAGCAAGGAATTGACCCAGCCACACACAAGCCTCTATCAACTGATCATGATGATAAGAAACAAGAAGACAGCAAAATAATGATGACGGAGAATAATGAGAAGAACACAACAACACTACCTTCCTCTATACAACTTCCATTCTCAACAAACTTATCCTCGTCAATTCTTTTGAACGACGATTCCGGTAACTACTACGGCAGCGGCGGCGACAGCAACAACGCAATAATAGAAGCTTCTAGAGACATGTTCATGACGAATAATAACAACAAGGCAACGTTTTTGGACCCTCTATCATCTCTGTATGCAGATTATTTCCCTCATCAACAACAACAGCCGAATAATAATTACCATCAGCTATCAGCAGTAACTGCCGTAACAAACTACTGTGGAGGAGGATTCTCTTCAATGCCGAGCCTAACTAACTCGGATCAAGGGGGACACGTGTCAGTCACAGATCAGTTAGTTAAGGAAAGTTCTAGCAATAACAGCTCATCAAACATGTACACATCGCCATGGGACGAAAATATCATCACTAACAAGATGATGGAACCGTTTTTTCAGTTTAATGCCATCAAATGTGAGGATTTATACAAGACAAGTTGTTCTTCATGGGAAGAAGATAATCAAGAACACACTCATCATCATCACACTAATAACACTGCTTCTTCTTCTTCCATACATTTCAGTAACTATCCGCTTTCGGAGGATCTAACCGCCGCTAATTTTGATGTCTTCCACCATATATGA 1098 0.4162 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEILGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLVKQGIDPATHKPLSTDHDDKKQEDSKIMMTENNEKNTTTLPSSIQLPFSTNLSSSILLNDDSGNYYGSGGDSNNAIIEASRDMFMTNNNNKATFLDPLSSLYADYFPHQQQQPNNNYHQLSAVTAVTNYCGGGFSSMPSLTNSDQGGHVSVTDQLVKESSSNNSSSNMYTSPWDENIITNKMMEPFFQFNAIKCEDLYKTSCSSWEEDNQEHTHHHHTNNTASSSSIHFSNYPLSEDLTAANFDVFHHI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272387g00002 365 Gene3D - 69 151 - -
Stsc272387g00002 365 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc272387g00002 365 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc272387g00002 365 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272387g00002 365 CDD SANT 70 109 IPR001005 -
Stsc272387g00002 365 SMART sant 13 63 IPR001005 -
Stsc272387g00002 365 SMART sant 66 114 IPR001005 -
Stsc272387g00002 365 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc272387g00002 365 FunFam MYB transcription factor 11 67 - -
Stsc272387g00002 365 CDD SANT 17 61 IPR001005 -
Stsc272387g00002 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc272387g00002 365 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Stsc272387g00002 365 Gene3D - 11 67 - -
Stsc272387g00002 365 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc272387g00002 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc272387g00002 365 FunFam Transcription factor MYB86 69 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272387g00002 Stsc-Chr272387 27971 29838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272387g00002 1 146 MYB Transcription Factor Family AT4G01680 76.510 1.46e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272387g00002 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272387g00002 K09422 - gmx:100811140 344.354