Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272385g00009 ATGGAGAGAGAGGAAGCTGGCAAACAATCCACACAAGAAGAAAGAATGTGGGATCTCAATGACTCACCCGATCAGAGGAGGAGAAAGGGCGAGGAACAATCCGAAGAAGGTTGCTCTTCTCTCAAGAGAGTTGGATCTGTTTCCAATTCATGCTCCTCCGCAGTTGTCATCGAAGACGGATCAGAAGAAGAAGAACAACAAGAAGAACAAGAATCAGAGGAAGACGGAAGCATCGCGAGAGCAACAACAGCGATGAAGAAGAGTAGAAGAAGCAAGATATTCGGGTTCTCAGTAACCGACGGTGACGATGATGACGACGGTAACGATGAAGATGAAGATGAAGATGAAGAGTCCATGGATAGTGAGAGCCACTGCCAGCAGGTAGTGACTCGGCAGTTTTTCCCCGTGGAAGAGGGAGATGTGACCGCCAACGCCACATCATCAGCAGCTGGCGGCGGCGGAGACGGCGACGGTGACGGCAGTGGGTCTAGTTTCCCCCGTGCTCACTGGGTAGGTGTGAGATTCTGCCAATCGGAAGCACTTGGCGCTGGAAAACCATCAGTGGAAGTTTCTTCTCAGCCCATGAAGAAGAGTAGGCGAGGACCAAGGTCAAGAAGCTCACAGTACAGAGGGGTCACTTTTTACAGAAGAACCGGTCGATGGGAGTCTCATATTTGGGACTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGGTGA 738 0.5081 MEREEAGKQSTQEERMWDLNDSPDQRRRKGEEQSEEGCSSLKRVGSVSNSCSSAVVIEDGSEEEEQQEEQESEEDGSIARATTAMKKSRRSKIFGFSVTDGDDDDDGNDEDEDEDEESMDSESHCQQVVTRQFFPVEEGDVTANATSSAAGGGGDGDGDGSGSSFPRAHWVGVRFCQSEALGAGKPSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAAR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272385g00009 245 Pfam AP2 domain 208 244 IPR001471 GO:0003700|GO:0006355
Stsc272385g00009 245 ProSiteProfiles AP2/ERF domain profile. 208 245 IPR001471 GO:0003700|GO:0006355
Stsc272385g00009 245 SUPERFAMILY DNA-binding domain 207 245 IPR016177 GO:0003677
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 1 38 - -
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 1 166 - -
Stsc272385g00009 245 SMART rav1_2 208 245 IPR001471 GO:0003700|GO:0006355
Stsc272385g00009 245 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 123 245 - -
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 58 72 - -
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 100 120 - -
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 182 211 - -
Stsc272385g00009 245 Gene3D AP2/ERF domain 207 245 IPR036955 GO:0003700|GO:0006355
Stsc272385g00009 245 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272385g00009 Stsc-Chr272385 26821 28297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272385g00009 16 239 AP2-EREBP Transcription Factor Family AT4G36920 47.436 3.12e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272385g00009 AP2 6.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272385g00009 K09284 - gmx:100792442 254.218