Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272385g00006 ATGGAGAGAGAGGAAGCTGGCAAACAATCCACACAAGAAGAAAGAATGTGGGATCTCAATGACTCACCCGATCAGAGGAGGAGAAAGGGCGAGGAACAATCCGAAGAAGGTTGCTCTTCTCTCAAGAGAGTTGGATCTGTTTCCAATTCATGCTCCTCCGCAGTTGTCATCGAAGACGGATCAGAAGAAGAAGAACAACAAGAAGAACAAGAATCAGAGGAAGACGGAAGCATCGCGAGAGCAACAACAGCGATGAAGAAGAGTAGAAGAAGCAAGATATTCGGGTTCTCAGTAACCGACGGTGACGATGATGACGACGGTAACGATGAAGATGAAGATGAAGATGAAGAGTCCATGGATAGTGAGAGCCACTGCCAGCAGGTAGTGACTCGGCAGTTTTTCCCCGTGGAAGAGGGAGATGTGACCGCCAACGCCACATCATCAGCAGCTGGCGGCGGCGGAGACGGCGACGGTGACGGCAGTGGGTCTAGTTTCCCCCGTGCTCACTGGGTAGGTGTGAGATTCTGCCAATCGGAAGCACTTGGCGCTGGAAAACCATCAGTGGAAGTTTCTTCTCAGCCCATGAAGAAGAGTAGGCGAGGACCAAGGTCAAGAAGCTCACAGTACAGAGGGGTCACTTTTTACAGAAGAACCGGTCGATGGGAGTCTCATATTTGGGACTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACTGCACATGCAGCTGCTCGTGCATACGATAGAGCGGCGATTAAGTTCCGAGGAGTGGAGGCAGACATAAACTTCAACATTGAAGATTACGGAGAAGACTTGAAGCAGGCAAGTTGTGTAACTTTGCACAAATGTGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAATGAGCTTAATAATTCTGAATCCAGAGGTAATGCTACTGATCACAATCTAGATTTAAGTTTGGGAAATTCAAGCTTCAAATCTAGCAACAATAATCGAGCAATGGGGAATCATACCACAAATGTTCAAGATCATCATCAGCAGCAGCACATGCTTTCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGCAATAGAAACATGGAAGCACATGGAGGAAGGGATTTACACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACTCACATCCATTCTTCAACTTCAACTTCTTCATCTTCATCAGCATCTATTGAAATGCAAAGATATGGTCCCTACAGGTCCCTAGGGGAGCCCCAAGTGCTTCACACTTTTGCACATCTTCAACCACCAAATTTTTATTTCCCCAGCAGCAGTAGTAATGGAGGTCGTGTAGGGAATGATCTTTCATTATCATCAATGGTGGATCATCATCAACAACAGTTGCATTTGCAATCTGGACCTCCACATCACTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACACGTTATCAGACCCTCTTCTCATCACCAAGGTTGGCTGCAGAAAAATAATGGCTTCCACACACTCATGAGACCCCCTTAA 1671 0.4656 MEREEAGKQSTQEERMWDLNDSPDQRRRKGEEQSEEGCSSLKRVGSVSNSCSSAVVIEDGSEEEEQQEEQESEEDGSIARATTAMKKSRRSKIFGFSVTDGDDDDDGNDEDEDEDEESMDSESHCQQVVTRQFFPVEEGDVTANATSSAAGGGGDGDGDGSGSSFPRAHWVGVRFCQSEALGAGKPSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYGEDLKQASCVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNNSESRGNATDHNLDLSLGNSSFKSSNNNRAMGNHTTNVQDHHQQQHMLSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSSTSTSSSSSASIEMQRYGPYRSLGEPQVLHTFAHLQPPNFYFPSSSSNGGRVGNDLSLSSMVDHHQQQLHLQSGPPHHYLATAAASSGFPPHVIRPSSHHQGWLQKNNGFHTLMRPP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272385g00006 556 Gene3D AP2/ERF domain 207 266 IPR036955 GO:0003700|GO:0006355
Stsc272385g00006 556 Gene3D AP2/ERF domain 276 332 IPR036955 GO:0003700|GO:0006355
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 144 164 - -
Stsc272385g00006 556 CDD AP2 278 333 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 277 - -
Stsc272385g00006 556 FunFam AP2-like ethylene-responsive transcription factor 207 266 - -
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 1 125 - -
Stsc272385g00006 556 SUPERFAMILY DNA-binding domain 278 333 IPR016177 GO:0003677
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 183 208 - -
Stsc272385g00006 556 Pfam AP2 domain 276 322 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 Pfam AP2 domain 208 256 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 58 72 - -
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 100 120 - -
Stsc272385g00006 556 ProSiteProfiles AP2/ERF domain profile. 253 331 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 39 56 - -
Stsc272385g00006 556 CDD AP2 208 265 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 MobiDBLite consensus disorder prediction 1 38 - -
Stsc272385g00006 556 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Stsc272385g00006 556 SMART rav1_2 208 270 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 SMART rav1_2 278 337 IPR001471 GO:0003700|GO:0006355
Stsc272385g00006 556 ProSiteProfiles AP2/ERF domain profile. 208 264 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272385g00006 Stsc-Chr272385 22824 28208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272385g00006 16 361 AP2-EREBP Transcription Factor Family AT4G36920 56.623 2.58e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc272385g00006 AP2 2.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272385g00006 K09284 - gmx:100792442 617.461