Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272381g00003 ATGCAGGACCAAAATGGTATAGGGAAGGTGCTGAAAAAGGTGAAGCCATATCTTGCTATGGTTTCGCTTCAGTTTGGGTACTCTGGGATGTATGTGATCACCATGGTTTCTTTCAAACATGGAATGAGTCATTGGGTACTCTCTGTATACCGTCATGTTATTGCCACACTCATCATGGCTCCCTTTGCTTTTGTTCTTGAAAGAAAAATAAGGCCAAAGATGACTCTGCCAATCTTCCTGAGGTTAGCAGCGCTTGGTTTCCTTGAGCCAGTTCTTGACCAAAATTTGTACAACATGGGTATGAAGAGCACCTCAACAACGTTTGCATCGGCCATTGTTAATGTCCTCCCAGCCATTACTTTTGTTATGGCTCTCATTTTCAGATTAGAGACAGTGAATTTGAGAAAGATTCACAGCATAGCGAAGGTAATTGGAACAATAGTGACAGTATCAGGAGCCATGGTTATGACTCTATACAAAGGACCAGCACTTGAGATCGTAAAGGGACATGGAGGAGGAGCCACAAACCATGGTAGTAGTAATAGCTCAGGAACAGAGCCTTCTGAACAAAACTGGGTGGTTGGCACACTCATGCTCATTGCAAGTTGTGGTGGTTGGGCTAGCTTCTTTATCTTGCAATCTTTGACTTTAAAGATATACCCAGCAGAGCTCTCACTCACCTCTTGGATATGCTTTTTGGGCATTTTTGAGGGTGCAATTGCGACCCTTATATTCGAACGTGACATGAGTGTTTGGTCCATTGGCTGGGACTCAAGGCTTCTTGCTTGTGTTTATTCCGGGGTGGTGTGCTCTGGAATTGCATATTATGTACAAGGAGTTGTGACCAGGGAACGTGGACCAGTTTTTGTGACTTCTTTCAGCCCTCTAATTATGATTATCACTGCTGCATTAGGTACAATTGTCTTGGCTGAGCAAATTCATCTTGGAAGTGTAATTGGAGCTATTGTAATTGTTTGCGGGCTATACACCGTGGTATGGGGAAAAAGCAAAGACAATGTGAAAGAAGAAGCAGTGAAAGTTGAGGAGGGTCAAGAATTGCCAATAAGGGACACCAGAAAATCAGGATCTGAAATTTTAATTTAA 1104 0.4284 MQDQNGIGKVLKKVKPYLAMVSLQFGYSGMYVITMVSFKHGMSHWVLSVYRHVIATLIMAPFAFVLERKIRPKMTLPIFLRLAALGFLEPVLDQNLYNMGMKSTSTTFASAIVNVLPAITFVMALIFRLETVNLRKIHSIAKVIGTIVTVSGAMVMTLYKGPALEIVKGHGGGATNHGSSNSSGTEPSEQNWVVGTLMLIASCGGWASFFILQSLTLKIYPAELSLTSWICFLGIFEGAIATLIFERDMSVWSIGWDSRLLACVYSGVVCSGIAYYVQGVVTRERGPVFVTSFSPLIMIITAALGTIVLAEQIHLGSVIGAIVIVCGLYTVVWGKSKDNVKEEAVKVEEGQELPIRDTRKSGSEILI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272381g00003 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 336 - -
Stsc272381g00003 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 150 - -
Stsc272381g00003 367 Pfam EamA-like transporter family 195 332 IPR000620 GO:0016020
Stsc272381g00003 367 Pfam EamA-like transporter family 28 150 IPR000620 GO:0016020
Stsc272381g00003 367 PANTHER WAT1-RELATED PROTEIN 15 339 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272381g00003 Stsc-Chr272381 18429 24928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272381g00003 8 358 Nodulin-like Gene Family AT4G08300 64.789 2.53e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272381g00003 - - gmx:100814921 601.282