Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272377g00003 ATGATGGCCTTCTTCTTCTCTTTCATGTCACACCACAAGGCTCTTCCTGCTTGCCTTGTGTTCTTCTTCCTGCTTTCTTGCACCTGCTTCACTTCAACAGAAGCTTATGACGCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGTTGGACACCTGATGGTTATGTTGCTGTTGTTACGATGAACAACTTCCAACAATATCGGCATATTGCAGCACCTGGCTGGTCAATGGGATGGACATGGGCAAAGAAGGAGGTTATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGGGATTGTTCAAAGTTTAAGGGAAGCCCTCCACATTGCTGTAAGAAGGATCCCACGGTTGTGGATTTACTTCCTGGCACACCTTACAACCAGCAAATTGCAAATTGCTGCAAAGGTGGTGTACTTAGCTCATGGGCTCAGGATCCGACCAATGCAGTCGCATCGTTTCAAGTCAGTGTTGGTAGAGCTGGAACCACCAACAGAACTGTCAAAGTGCCAAAGAATTTCACCTTGAAAGCACCTGGTCCGGGGTATACTTGCGGTCCAGCAAAAATTGTGCCACCAACAAAGTTCATTCAATCAGACAAAAGAAGAGTTACCCAAGCACTCATGACATGGAATGTGACGTGCACATATTCGCAGTTTCTAGCCCAGAAAACTCCTACTTGCTGTGTATCTCTCTCATCGTTCTATAACGATACTATTGTGCCCTGCCCAACATGTTCATGTGGCTGCAAGAGCAACTCATCTTGTGTAAATGCTGATACGCCACATTTGGCATCGGTAGTTTCTGGAAAGAATAACTTTGCTCCTTTAGTTCAATGTACTAGCCATATGTGTCCGGTTAGAGTCCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCACTATTACTAATTTCAATTACAGGATGAATTATTCAGAGTGGAACTTAGTTGTTCAACACCCGAACTTTGATAATCTGACTCAACTCTTTAGTTTCAACTACAAGTCATTAACTCCCTATGGTGACATAAATGATACTGCTATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAATGAAGCTGGGCCTAATGGTAATGTACAATCAGAGCTACTCTTCAGAAAGGATAAAGCAACTTTCACTTTCGAGAAGGGCTGGGCTTTCCCTCGAAGGATCTATTTCAATGGTGACAACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTGCCTAATGCTGGTTCTCAAAAGGAGGCTTCCTTGCTTGTCTTAGTGTTGGCTTATTTGGTATCCTTGGTATTTTACGCATACGCTTGA 1347 0.438 MMAFFFSFMSHHKALPACLVFFFLLSCTCFTSTEAYDALDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWSMGWTWAKKEVIWSMMGGQTTEQGDCSKFKGSPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVPPTKFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCKSNSSCVNADTPHLASVVSGKNNFAPLVQCTSHMCPVRVHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGDINDTAMLWGVKFYNDFLNEAGPNGNVQSELLFRKDKATFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQKEASLLVLVLAYLVSLVFYAYA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272377g00003 448 PIRSF COBRA 7 448 IPR006918 GO:0010215|GO:0016020
Stsc272377g00003 448 PANTHER PROTEIN COBRA 24 437 IPR006918 GO:0010215|GO:0016020
Stsc272377g00003 448 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272377g00003 Stsc-Chr272377 17702 20948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272377g00003 19 446 COBRA Gene Family AT3G02210 74.424 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272377g00003 - - gmx:100783820 833.943