Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272373g00004 ATGGGGAGAAGTCCTTGTTGCTCAAAGGAGGGCTTGAACCGCGGTGCTTGGACAGCTCAAGAAGACAAAATCCTCAGAGATTATATCAGCCTCCATGGCCAAGGAAAGTGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCACAAGATGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGAAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAAAGTTAGAGATCTTCAAACACCAAGCAATGCATCTTCTCAGCAAGCCAATGAAACAAAGAATAACAACAACAATAATAATAACTGTAACCACAACAACAACTTTCAGAAACCAACAAGAATGCCTCCTGCAACAAACAAGGTGGTCCCCACTACCACTCCCTCTCTTTCACCGTTAAACGATTCACATTCTCTCCTCGTTCGTACAAAGGCTTCAAAGTTCTCCAAGTCACTCTTCTTGGATCATTCACCAACAAATACTTCATTATTATTGCCGCAGAACAAAACTGTTGCTAATAATGATAACAACAACAATAATAACGAAGAAGAACTTGATGAAGCTGGTGGTGGCGGTTTGATGCCACCGCTGGGATTGTTGCTTCCGAGTAACGAAGTGGCGGCGAGCGATGGTCGCAAAGATAATAACAACATGGTGATGATGGCAATGGAGATAGGTAACAATAATAATATAGAAGAATACAAAGAGATTTCGACAACAGAATTGCTCTTGATGGATTTTGATATTGGACAGATTTGCTTGCCTTCTCTTCTGAACTCGGATTTCAAAGATATATGCGATTTCGGTTATAATAATAATAATAATAGCAGTAACAGTAACTGTGAAGATCTGTTGGGTTTCTTACCGGAGGACATGCTGGTTCCCTCTGATGAAATTCTAAAGGAAGCAACCGTTGTTGTACCAAGCAACTTTTGTGACGAAACAAATGCTCAGGCAGAAAACAGTTTCTGGGAAGACTGGTCATAA 1107 0.4056 MGRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISQDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVRDLQTPSNASSQQANETKNNNNNNNNCNHNNNFQKPTRMPPATNKVVPTTTPSLSPLNDSHSLLVRTKASKFSKSLFLDHSPTNTSLLLPQNKTVANNDNNNNNNEEELDEAGGGGLMPPLGLLLPSNEVAASDGRKDNNNMVMMAMEIGNNNNIEEYKEISTTELLLMDFDIGQICLPSLLNSDFKDICDFGYNNNNNSSNSNCEDLLGFLPEDMLVPSDEILKEATVVVPSNFCDETNAQAENSFWEDWS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272373g00004 368 FunFam Transcription factor TT2 70 143 - -
Stsc272373g00004 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272373g00004 368 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc272373g00004 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc272373g00004 368 MobiDBLite consensus disorder prediction 115 154 - -
Stsc272373g00004 368 FunFam MYB-related transcription factor 13 66 - -
Stsc272373g00004 368 SMART sant 13 63 IPR001005 -
Stsc272373g00004 368 SMART sant 66 114 IPR001005 -
Stsc272373g00004 368 CDD SANT 16 61 IPR001005 -
Stsc272373g00004 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc272373g00004 368 MobiDBLite consensus disorder prediction 209 235 - -
Stsc272373g00004 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc272373g00004 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc272373g00004 368 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc272373g00004 368 CDD SANT 71 112 IPR001005 -
Stsc272373g00004 368 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 207 - -
Stsc272373g00004 368 Gene3D - 71 146 - -
Stsc272373g00004 368 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272373g00004 Stsc-Chr272373 15999 19151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272373g00004 1 179 MYB Transcription Factor Family AT4G38620 51.087 1.33e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272373g00004 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272373g00004 K09422 - gmx:100802704 284.648