Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272370g00004 ATGGATTTTAGTGATGACCTTAGATACTTGCCTGAAATGGCTCCTAGATCCGCTAATCAAGCCATATTAGAAGATGGTGGCATGCAGATTCTTTCGAAGGAAGATATGGAGACCTTGGAACACTGCAGAGCAATGTCTAGAAGAGGCGAATGTCCCCCCTTTCTAATTGTTTATGATGCACGTGAAGGCTATACTGTGGTAGCTGATGCTCCAATCAAGGATTTGACATTTATTGCTGAATACACTGGCGATGTGGATTATCTTAAGAATCGAGAAAGTGATGATTGTGACAGTATGATGACCCTTCTTTTATCAAGTGATCATTCTCAAAGTCTTGTCATCTGTGCTGATAAACGTGGAAACATTGCTCGGTTTATTAATGGCATCAACAATCATACTCAGGAAGGTAAGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCCTTTTGGTTGCTACTCGTGATATTTCTAAGGGCGAGAAGCTTTATTATGATTATAATGGTTATGAGCATGAATATCCTACACATCATTTTGTCTGA 561 0.3939 MDFSDDLRYLPEMAPRSANQAILEDGGMQILSKEDMETLEHCRAMSRRGECPPFLIVYDAREGYTVVADAPIKDLTFIAEYTGDVDYLKNRESDDCDSMMTLLLSSDHSQSLVICADKRGNIARFINGINNHTQEGKKKQNCKCVRYNVNGECRVLLVATRDISKGEKLYYDYNGYEHEYPTHHFV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272370g00004 186 CDD SET_ATXR5_6-like 49 186 - -
Stsc272370g00004 186 Gene3D SET domain 1 186 IPR046341 -
Stsc272370g00004 186 Pfam SET domain 109 174 IPR001214 GO:0005515
Stsc272370g00004 186 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 13 184 - -
Stsc272370g00004 186 SMART set_7 52 180 IPR001214 GO:0005515
Stsc272370g00004 186 ProSiteProfiles SET domain profile. 52 174 IPR001214 GO:0005515
Stsc272370g00004 186 SUPERFAMILY SET domain 46 174 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272370g00004 Stsc-Chr272370 25455 26931 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc272370g00004 SET 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272370g00004 K24406 - tcc:18611813 331.257