Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272370g00002 ATGAACAGAAAACCTCATAAACCCCTCCTCATCTCCACCTTCCTCTTCCCATTAACCAGATCCACCATTCTCATCCTCTCCATGGCTTCCCTCTTTTCCATATCCCTCCTCTGCATCTTCTTCTCCCTCTTCCTCTCTTCTTCCCACGCTCAACCTACCCTCGCTGTCCTCCAAGCATGCAAGGCCACGCGCTTCCCTCTCATATGCCACACCACCCTCGCTCCTGCAACCCTCACCAACCTTAACCCTTCCCCGGTCGAGCTCGTCCAATCCGCCATTGATTCCTCCTACACCAAGCTCCACGAAGCCATCTCCATGGTCTCCTCCCTCTACGACGACTCCCTCGCCTCCAACCGCACACGCGCCACCGCAGCCAAGACCTGCATTCAGATCCTTCGCTACTCACGCCGCCGGACATTCCTCGCCGCCGACGCCATCCCCCGCCATGCCACGAAAGATGCTCGCGCGTGGCTTGGCGCCTCCTTGGCCTACCAGTACGGTTGCTGGTCCAGCCTCAAGTACGCCAACGACACCATCTCCGTCGCCGAAGCGATGGTTTTCGTAGATTCGATTACCTACATCACCAGCAACGCCCTCAGCATGGTTGCATCCTACGACCTCTTCGGAAACGACACCGCTTCATGGAGGCCGCCGTTGACGGAGCGTAACGGGTTCTGGGAGCCAACGGTTAGTGGATCGGGAACTAAGTTAGGAGTGCCGTCGAACTTGACGCCGGACGCTACGGTTTGCAAGGGCGGTGATGGTTGTTATAGGACGGTGCAGGAGGCGGTTCACTCGGCGCCGGATAACGTTAAGGTCGGAGAAAAGCCGTACGTGATTCACATAAAGGAAGGGGTATATGAGGAGAAGGTTAGGGTTCCACCAAAGAAGAGGAATGTGGTGTTCTTGGGCGATGGAATCGGCAAAACCATCATCACCGGTTCCCGCAGCGTTGGCCTTATGCCCGGGATGACAACCTATAACTCTGCCACCGTCGGGGTTCTTGGGGATGGATTCATGGCCAGGGATCTCACCTTCCAGAACACGGCTGGAGCAGATGCACACCAGGCGGTGGCCTTCCGATCTGACAGTGATCGTTCCGTCATTGAGAATTGTGAGTTCCTTGGCAACCAAGACACTCTCTATGCTCAGTCCCTGCGCCAGTTTTACAAATCGTGCCGGATTGTTGGCAATGTGGATTTCATCTTTGGAAACTCGGCATCAATCTTCCATGACTGTGTAATCCTGGTGAAGCCTAGGCAAGCCGATCCAGAGAAGGGAGAGACCAATGCCATCACAGCACAGGGCAGGACGGACCCTGCTCAGGCAACCGGCTTTGTCTTCCGGAACTGCGTGTTTAATGGCACTGAGGAATACATGGCATTGTATAACAGCAAGCCTCAAGTACACAAGAACTATCTAGGTAGGCCGTGGAAGGAGTATGCTAGGACTGTAATGATTAATTCGGTCATGGAATCCCTGATTATGCCGGATGGTTGGATGCCTTGGAGTGGGGACTTTGCGCTGCCGACGCTATACTATGGAGAATTCGAGAACACAGGACCCGGTTCGAGTTTGGCTCAAAGGGTTCCATGGAGCAGCAAGATCCCCAGTGAACATGTGGATACTTACTCGCTTCAGAATTTCATTCAAGCAGCTGATTGGGCTCCATCATCTCAGTGA 1683 0.5437 MNRKPHKPLLISTFLFPLTRSTILILSMASLFSISLLCIFFSLFLSSSHAQPTLAVLQACKATRFPLICHTTLAPATLTNLNPSPVELVQSAIDSSYTKLHEAISMVSSLYDDSLASNRTRATAAKTCIQILRYSRRRTFLAADAIPRHATKDARAWLGASLAYQYGCWSSLKYANDTISVAEAMVFVDSITYITSNALSMVASYDLFGNDTASWRPPLTERNGFWEPTVSGSGTKLGVPSNLTPDATVCKGGDGCYRTVQEAVHSAPDNVKVGEKPYVIHIKEGVYEEKVRVPPKKRNVVFLGDGIGKTIITGSRSVGLMPGMTTYNSATVGVLGDGFMARDLTFQNTAGADAHQAVAFRSDSDRSVIENCEFLGNQDTLYAQSLRQFYKSCRIVGNVDFIFGNSASIFHDCVILVKPRQADPEKGETNAITAQGRTDPAQATGFVFRNCVFNGTEEYMALYNSKPQVHKNYLGRPWKEYARTVMINSVMESLIMPDGWMPWSGDFALPTLYYGEFENTGPGSSLAQRVPWSSKIPSEHVDTYSLQNFIQAADWAPSSQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272370g00002 560 NCBIfam pectinesterase inhibitor domain 28 202 IPR006501 GO:0004857
Stsc272370g00002 560 SMART PMEI_2 51 201 IPR006501 GO:0004857
Stsc272370g00002 560 FunFam Pectinesterase 4 243 560 - -
Stsc272370g00002 560 Pfam Pectinesterase 246 552 IPR000070 GO:0030599|GO:0042545
Stsc272370g00002 560 Gene3D - 240 560 IPR012334 -
Stsc272370g00002 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 205 IPR035513 -
Stsc272370g00002 560 PANTHER PECTINESTERASE 39 557 - -
Stsc272370g00002 560 SUPERFAMILY Pectin lyase-like 244 558 IPR011050 -
Stsc272370g00002 560 FunFam Probable pectinesterase/pectinesterase inhibitor 51 54 204 - -
Stsc272370g00002 560 CDD PMEI-like_3 59 206 - -
Stsc272370g00002 560 Pfam Plant invertase/pectin methylesterase inhibitor 58 201 IPR006501 GO:0004857
Stsc272370g00002 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272370g00002 Stsc-Chr272370 4265 6946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272370g00002 59 559 Carbohydrate Esterase AT5G09760 61.341 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272370g00002 - - gmx:100802102 719.539