Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272366g00002 ATGGACATGGGTCGATTCGAGCTTTTATCCTTGACTGGGTCATTCACAGTCCCTGATAATAGTGCCACGATTCCTTCTAGTGGATTGAGTGTCTCACTGGCTGGCCCTGATGGTCGCGTGATAGGAGGGGGTGTTGCTGGTTTGTTGACAGCTGCTGGCCCGATCCAGATTGTAGTGGGGAGCTTCATTCCAAGTGGTCAAAAGCCCCCAAAAAGGAAATATAACCGTCAACCGACAGCCTACCATGCTGCTTCGGGTCCTACGGAGACAGTAGCAGCTGCAGGACCTATCTCACAATCAAATCCTAGTGGTGAAAATCCTCTGGGACATTCACCTCAGTTACCGGAACAAGGTCAGAGAGAGTCGGTCAGCGCATCGAGCGATAAACTGAATTTAGATGACTCACTTAATGGTGATGATTGGAATGATACTGAAGATTTTTCAGATCATAGGCCATCCCCAGACATCAACATAACTTTGGCTGATGAGTAG 492 0.4837 MDMGRFELLSLTGSFTVPDNSATIPSSGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFIPSGQKPPKRKYNRQPTAYHAASGPTETVAAAGPISQSNPSGENPLGHSPQLPEQGQRESVSASSDKLNLDDSLNGDDWNDTEDFSDHRPSPDINITLADE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272366g00002 163 MobiDBLite consensus disorder prediction 92 132 - -
Stsc272366g00002 163 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 119 IPR039605 GO:0003680
Stsc272366g00002 163 Gene3D - 2 79 - -
Stsc272366g00002 163 ProSiteProfiles PPC domain profile profile. 1 87 IPR005175 -
Stsc272366g00002 163 SUPERFAMILY AF0104/ALDC/Ptd012-like 4 65 - -
Stsc272366g00002 163 Pfam Plants and Prokaryotes Conserved (PCC) domain 4 62 IPR005175 -
Stsc272366g00002 163 MobiDBLite consensus disorder prediction 61 163 - -
Stsc272366g00002 163 CDD DUF296 4 62 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272366g00002 Stsc-Chr272366 10072 11074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272366g00002 4 72 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 61.429 7.30e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272366g00002 - - gmx:100779227 179.104