Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272362g00003 ATGGTGCTACTGATGTTGCCTATAGCTTTGGAGGGACAGGTGTTAAAGTTGACAAGGATCCAAAATTTGCCTCTGCTGAAAGATAAGGAAGAACAAGACAAGAAGGACACGAAGAAAATGCCCTCTGCTCCTTATGTTCTATGGTGCAAAGATCAATGGAATGAGATCAAGAAAACAAACCCAGAGGCAGAATTCAAGGAGATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCACGGAAGAGAAGAAGCCGTATGAAGACAAGTACAATGCTGAAAAAGAAGCATACATGGAGGGCCATCATGGTGACACATCAGCAACTTTCTTTTGTGGAGATGTTGATGATAAGGCAAGAAAACTAGTTCAGGAAATTAGAGATATTGCAGCAATGGAAGGTGTTAAGAGAAAACATTTCTTTCTTGAAGCTGATATAAAAGGACCATCACTGAAGCTTAACAACACTAGAAAGGCGATACTGACTATAACCTTGGAACAGCTAATGAAGATTTAA 516 0.4012 MVLLMLPIALEGQVLKLTRIQNLPLLKDKEEQDKKDTKKMPSAPYVLWCKDQWNEIKKTNPEAEFKEISNMLGAKWKTVSTEEKKPYEDKYNAEKEAYMEGHHGDTSATFFCGDVDDKARKLVQEIRDIAAMEGVKRKHFFLEADIKGPSLKLNNTRKAILTITLEQLMKI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272362g00003 171 Pfam Spindle and kinetochore-associated protein 1 117 163 IPR009829 GO:0007059|GO:0008017|GO:0051301
Stsc272362g00003 171 Gene3D High mobility group box domain 26 108 IPR036910 -
Stsc272362g00003 171 Pfam HMG (high mobility group) box 39 102 IPR009071 -
Stsc272362g00003 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 27 99 IPR044601 GO:0003677
Stsc272362g00003 171 CDD HMG-box_AtHMGB6-like_rpt1 39 100 - -
Stsc272362g00003 171 SUPERFAMILY HMG-box 35 101 IPR036910 -
Stsc272362g00003 171 SMART hmgende2 37 108 IPR009071 -
Stsc272362g00003 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272362g00003 Stsc-Chr272362 26987 32047 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc272362g00003 HMG_box 1.4e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272362g00003 K09273 - cave:132175196 124.02