LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272359g00003	ATGGAGCGAGTGGGGCTGTTTCTTCTCTATGCAGCTTTGGTGTTTGATGTTATGCTCAGGGTTTCTGCCAATCAAGAAAGTGATGCCTTGGGTCTATTTAAGAAAGCCTTGATTGATCCTACGCAAACTCTTCAAACCTGGGATACCACTCTTGTAAATCCTTGCACATGGTTTCATATCACTTGCAACAATGATAATAGTGTGTCCCGCATTGATCTTGGAAATGCAAATCTTTCGGGTAAACTAGTTCAAGAACTTGGCCAGCTTCCAAATTTGCAAAGCCTGGCACTTTTCGATAACAATTTAACCGGGCCTATCCCGAATGAGCTTGGAATGTTGACAAATTTGGAAACCTTGGATCTTTACTCAAACAAATTAACTGGTGTCATACCAGACACATTTGGCAGCCTTAAGAAGTTACAGAACCTGCGTCTCAACAACAACAGTTTTTCAGGAGAAATTCCCATGTCTTTGACCAACATTATGACTCTGCAAGTCCTTGATTTATCGAATAACAAGTTAATAGGAAATATTCCCATCAATGGTTCATTTTCATCATTTACCCCTGTCAGTTTTGGAAATAACCTCTTGAATAAAACAATAAATCCATCTCCACGCTATGTTCCACCACAAAATACCACCTCAGGTAACAGTGCCATTGGAGCTATTGCTGGAGGAGTTGCTGTTGGAGCTGCTTTATCCATTGCAGTCCCCGTGGTTTCAGTTGCTTACTGGCTACGAAGGAAACCAGAGGATGACTACTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGCCCGCTTAAAAAGTTTTCTCTGCATGAGCTGCAAATTGCTACAGATCACTTCAGCGTAAAAAATTTGCTGGGAAAGGGTGCGTTTGGCAAGGTTTATCAAGGACGCTTAGCTGATGGCACTGCTGTAGCAGTGAAACGACTTAAAGAGGAACGCTCCTACACTGAGGACTTTCAGTTTCAAACTGAAGTGGACATGATCAGCAGGGCTAAGCATCGTCATTTGCTTCAACTGCTCGGTTTTTGTATGACTCCTACTGAACGCTTGCTTGTGTATCCTTTGATGTTAAATGGAAGCGTAGCATCTTGCTTAAAAGTAGGGCGTCCGCAATCAAGACCCCCACTTAGTTGGGTACAACGGGAGTCTATTGCACTGGGATCTGCCAAGGGGCTTGCTTATTTGCACGATCATTGTAACCCAAAGATAATCCATCGTGATGTTAAAGCCGATAATATATTGCTAGATGAAAACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTTTAAAGAAACTCATGTTACCACACGTGTATGTGGTACACTCGGGCATATAGCACCAGAATACCTCGGAACAGGAAAGTCTTCGGAGAAGACTGATGTTTATGGATATGGCGTGATGCTTCTTGAACTAATAACTGGAAAGAGCTCTTTCGACATTGCACGGATTGCCAGAGATGATGATATCTTGTTGCTTGATTGGGTAAAAGGGCATCTGAAAGAAAACACGTTGGACAAACTGGTGGATAGTGCTTTACTGGGAGACTATAGCTTAGAAAAGAAAAGGGACAAGATCCGGGAAGAATTCGACCGAGCCCACCGATTCGTTGCCAATTTGAGGAACTATGATGAGTCAACTTCAAATGCCAACATCGAACCGGAACAACTCTCGGGTCCTAGATGA	1716	0.4283	MERVGLFLLYAALVFDVMLRVSANQESDALGLFKKALIDPTQTLQTWDTTLVNPCTWFHITCNNDNSVSRIDLGNANLSGKLVQELGQLPNLQSLALFDNNLTGPIPNELGMLTNLETLDLYSNKLTGVIPDTFGSLKKLQNLRLNNNSFSGEIPMSLTNIMTLQVLDLSNNKLIGNIPINGSFSSFTPVSFGNNLLNKTINPSPRYVPPQNTTSGNSAIGAIAGGVAVGAALSIAVPVVSVAYWLRRKPEDDYFDVPAEEDPEVHLGPLKKFSLHELQIATDHFSVKNLLGKGAFGKVYQGRLADGTAVAVKRLKEERSYTEDFQFQTEVDMISRAKHRHLLQLLGFCMTPTERLLVYPLMLNGSVASCLKVGRPQSRPPLSWVQRESIALGSAKGLAYLHDHCNPKIIHRDVKADNILLDENFEAVVGDFGLAKLMDFKETHVTTRVCGTLGHIAPEYLGTGKSSEKTDVYGYGVMLLELITGKSSFDIARIARDDDILLLDWVKGHLKENTLDKLVDSALLGDYSLEKKRDKIREEFDRAHRFVANLRNYDESTSNANIEPEQLSGPR	571

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272359g00003	571	FunFam	Somatic embryogenesis receptor-like kinase 1	362	537	-	-
	Stsc272359g00003	571	PRINTS	Leucine-rich repeat signature	116	129	-	-
	Stsc272359g00003	571	PRINTS	Leucine-rich repeat signature	161	174	-	-
	Stsc272359g00003	571	FunFam	Somatic embryogenesis receptor kinase 1	254	361	-	-
	Stsc272359g00003	571	SMART	serkin_6	285	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272359g00003	571	Gene3D	Ribonuclease Inhibitor	22	203	IPR032675	-
	Stsc272359g00003	571	Gene3D	Transferase(Phosphotransferase) domain 1	362	556	-	-
	Stsc272359g00003	571	SUPERFAMILY	L domain-like	25	201	-	-
	Stsc272359g00003	571	Gene3D	Phosphorylase Kinase; domain 1	254	360	-	-
	Stsc272359g00003	571	FunFam	Somatic embryogenesis receptor kinase 1	22	212	-	-
	Stsc272359g00003	571	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	7	538	-	-
	Stsc272359g00003	571	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	409	421	IPR008271	GO:0004672\|GO:0006468
	Stsc272359g00003	571	SUPERFAMILY	Protein kinase-like (PK-like)	264	530	IPR011009	-
	Stsc272359g00003	571	Pfam	Leucine rich repeat	114	174	IPR001611	GO:0005515
	Stsc272359g00003	571	Pfam	Protein kinase domain	286	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272359g00003	571	ProSiteProfiles	Protein kinase domain profile.	285	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc272359g00003	571	Pfam	Leucine rich repeat N-terminal domain	23	63	IPR013210	-
	Stsc272359g00003	571	ProSitePatterns	Protein kinases ATP-binding region signature.	291	313	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272359g00003	Stsc-Chr272359	21204	25306	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272359g00003	8	537	Receptor kinase-like Gene Family	AT4G33430	62.176	0.0	682

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Stsc272359g00003		Pkinase	7.1e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272359g00003	K13416		-	pvy:116119655	712.605