Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272358g00003 ATGAAAAATAATGGCAAAATTGTGGGAAGAAAACCTAAGAAAGCTTCTTCTTCTTCTGAATCATTGATCAAAGGACAATGGTCTCCTGAGGAAGACAGGATATTGGAGAAGCTGGTGAAGCAACATGGCATAAGAAAGTGGTCACAAATAGCTGATAAATTGGAGGGAAGAGTTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGCCCTGATATTAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGAATTTTGGTGGAGACTCATTCGAAGGTCGGAAATAAATGGGCAGAAATTGCAAAGCGAATACCGGGTCGAACTGAGAATTCTATCAAGAACCATTGGAATGCAACAAAGAGAAGACAAAACTCAAGAAAAAGGAATAAGAAGCCTTTGTCATCTTCAACCAACTCAAACAATAATGGGAAAACACAATCTTCAATTCTCCAAGACTACATTAGAAGCAAAACCCTAATTGGTACCAATAATATCACTTCTCCTGTTACTACTACTACTAATTCAACACCAACAACTATTGCTAGTGAATCTGAATCTATCACTAATAATAGTGACAATAATAATAATCCATACTGTTCAACACCAACAATCATTGCTGATGAATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTTTTCAATGGAGATGGTGTTGTGAAGAACCCTAATAATGGAGATGGGTTTGTTCATCATTCTTCCAATTATTATTATCCTCCTATTCTTCACAACCCGGTCAATAATAATAATTGTTGTTACCTTGATTCTGATCTGTATATCTCTCAATTGATGAACAATGGAGGTGCCACAAGTTCACCATCATCATCACTTTGCAATAATCAAAGGGCTTATGAGAAGAATCACAACATGGATTTTGATGAGTTGGTGGTTTAG 942 0.3641 MKNNGKIVGRKPKKASSSSESLIKGQWSPEEDRILEKLVKQHGIRKWSQIADKLEGRVGKQCRERWHNHLRPDIKKDGWSEEEERILVETHSKVGNKWAEIAKRIPGRTENSIKNHWNATKRRQNSRKRNKKPLSSSTNSNNNGKTQSSILQDYIRSKTLIGTNNITSPVTTTTNSTPTTIASESESITNNSDNNNNPYCSTPTIIADESYDDELLFMQQLFKENNQIVFNGDGVVKNPNNGDGFVHHSSNYYYPPILHNPVNNNNCCYLDSDLYISQLMNNGGATSSPSSSLCNNQRAYEKNHNMDFDELVV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272358g00003 313 CDD SANT 79 121 IPR001005 -
Stsc272358g00003 313 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Stsc272358g00003 313 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Stsc272358g00003 313 ProSiteProfiles Myb-like domain profile. 19 70 IPR001005 -
Stsc272358g00003 313 FunFam Transcriptional activator Myb isoform A 23 76 - -
Stsc272358g00003 313 Gene3D - 16 76 - -
Stsc272358g00003 313 Gene3D - 77 151 - -
Stsc272358g00003 313 CDD SANT 27 70 IPR001005 -
Stsc272358g00003 313 MobiDBLite consensus disorder prediction 1 26 - -
Stsc272358g00003 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Stsc272358g00003 313 SMART sant 23 72 IPR001005 -
Stsc272358g00003 313 SMART sant 75 123 IPR001005 -
Stsc272358g00003 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Stsc272358g00003 313 PANTHER MYB PROTEIN-RELATED 24 146 - -
Stsc272358g00003 313 MobiDBLite consensus disorder prediction 107 147 - -
Stsc272358g00003 313 MobiDBLite consensus disorder prediction 131 147 - -
Stsc272358g00003 313 Pfam Myb-like DNA-binding domain 27 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272358g00003 Stsc-Chr272358 19205 21295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272358g00003 5 292 MYB Transcription Factor Family AT5G58850 45.597 6.20e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272358g00003 Myb_DNA-bind_6 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272358g00003 K09422 - gmx:100786295 276.559