Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272357g00001 ATGGCACCTAATGAAAACTCAGCAACAGAGTTAACAGCACTTGTTGTGGATGATGATAGACAATTAAGGATGATTCATCAGAGGATGCTGAACAAAGTTGGAGTGAAGAATCAGGCAGTGGAGAATGGCAAAGAAGCTGTACAAATTCATTGCTCTGGTCAAGGATTTGACCTCATTCTCATGGACAAGGAAATGCCTTTGATGAATGGCATTGAGGCAACAAAGGAACTTCGGTCAATGGGAATTTGTAGCACAATTGTTGGGGTGTCATCTCACACAAAGGAAAAGCAAATACAAGAATTTATGGAAGCAGGGCTTGATGATTATCTAGTCAAACCCTTAAACCTTGCTAAGCTGCGTTCAATTCTTGATAAGATCATGTGA 384 0.4036 MAPNENSATELTALVVDDDRQLRMIHQRMLNKVGVKNQAVENGKEAVQIHCSGQGFDLILMDKEMPLMNGIEATKELRSMGICSTIVGVSSHTKEKQIQEFMEAGLDDYLVKPLNLAKLRSILDKIM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272357g00001 127 Pfam Response regulator receiver domain 14 123 IPR001789 GO:0000160
Stsc272357g00001 127 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Stsc272357g00001 127 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 127 - -
Stsc272357g00001 127 CDD REC_hyHK_CKI1_RcsC-like 14 123 - -
Stsc272357g00001 127 SUPERFAMILY CheY-like 10 126 IPR011006 -
Stsc272357g00001 127 SMART REC_2 11 123 IPR001789 GO:0000160
Stsc272357g00001 127 Gene3D - 1 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272357g00001 Stsc-Chr272357 23710 24174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272357g00001 11 127 Response Regulator Gene Family AT3G04280 43.697 5.30e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc272357g00001 Response_reg 6.6e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272357g00001 - - vvo:131612427 168.703