Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272347g00003 ATGAACAGAGGAATTGAAGTTCTGTCTCCAGCTTCTTACTTGCACAACTCAAATTGGTTGTTCCAAGAGAGTGGAGGAACAAAATGGACAGCAGAAGAGAACAAGCAATTCGAGAACGCCTTGGCGCTGTTCGACAAGGAGACGCCGGACCGGTGGCTGAGGGTGGCGGCGATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTACAGGGAGTTAGTTGAAGATGTGAATGTAATTGAATCTGGTTTCATACCAATTCCATCAGGGGGAAGTGGTGGTGATGTTGATGGTTCTTTCACATTGGAGTGGGTTGACAATCATGAATTTGATGGGTTTAAGCAATTCTATGGTGTTGGCTGCAAGAGGGGTTCTTCCACTACTAGGCCTTCTGATCAAGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAGACTATTTTTGATGGGTTTGAAGAAGTATGGCAAAGGTGACTGGAGAAATATATCTCGAAATTTTGTTACCACAAGAACGCCTACTCAAGTTGCGAGTCATGCTCAGAAATACTTTATCCGGCAACTCAACGGCGGAAAGGATAAGCGGAGATCTAGTATCCATGATATCACAATGGTTAACCTCCCCGAATCGAAATCGCTTTCGTCATCGGAAAGTAACAAACCTTCACCCTCCCCAGACCAGAATTCAAATTTAAATCAGAATCAGAAACTGCCAAGCATGGTAAAACAGGAACATGACTGGAAACCATTGCCATATGAGGGTGTGCCATTGGTGTTTGATTCAACAGATGGAAATTCCTTCATGACACCCTTGTGTGGTGCTTCTTCTTATGGATCTAAATCACAGGAGCAGTTTTTACTTAGAGGAACTTTTCATGGATTCCAATTTGGAGCTTATGATACTTTTATGCAAATGCAGCCAATGAAACCTCAGTGA 942 0.4374 MNRGIEVLSPASYLHNSNWLFQESGGTKWTAEENKQFENALALFDKETPDRWLRVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPSGGSGGDVDGSFTLEWVDNHEFDGFKQFYGVGCKRGSSTTRPSDQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPESKSLSSSESNKPSPSPDQNSNLNQNQKLPSMVKQEHDWKPLPYEGVPLVFDSTDGNSFMTPLCGASSYGSKSQEQFLLRGTFHGFQFGAYDTFMQMQPMKPQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272347g00003 313 CDD SANT 141 186 IPR001005 -
Stsc272347g00003 313 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Stsc272347g00003 313 Gene3D - 22 88 - -
Stsc272347g00003 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Stsc272347g00003 313 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Stsc272347g00003 313 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Stsc272347g00003 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 240 IPR043363 -
Stsc272347g00003 313 FunFam transcription factor MYB1R1 140 191 - -
Stsc272347g00003 313 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Stsc272347g00003 313 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Stsc272347g00003 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Stsc272347g00003 313 FunFam Transcription factor SRM1 21 88 - -
Stsc272347g00003 313 SUPERFAMILY Homeodomain-like 136 189 IPR009057 -
Stsc272347g00003 313 CDD SANT 28 75 IPR001005 -
Stsc272347g00003 313 SMART sant 25 77 IPR001005 -
Stsc272347g00003 313 SMART sant 138 188 IPR001005 -
Stsc272347g00003 313 MobiDBLite consensus disorder prediction 205 235 - -
Stsc272347g00003 313 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Stsc272347g00003 313 Gene3D - 140 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272347g00003 Stsc-Chr272347 28890 31386 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272347g00003 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272347g00003 - - qsa:O6P43_026398 433.721