Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00010 ATGGAGGATCATCATTTTAACATTTTGGAGTCTAATGGCGATAATGAAGAAATCGGTGGCAATAAGGATGATAAGGTTGAATCAAAAGGAGAATTGGAAGTATTATTGAGAAATAATGATGATGATGATTCATCAATGCATCAAAAGGAATATTTATTTGACATCATCCATAGACAAGAAAAGCAAGAAGCAACCAAAGATGCCATCCATGGAGATAGTGAAGAACTTATGTCACTCTCTCTAGGAGTCTCATCATCATTATTATCTTCCAATAATAATAATAGAGAGGAGAATTTGGATACAGATAATAATAATAATCAACAACTACTCACTGAGATGTGGCCACCGAGTAAAGTTCTCAAGACAACAAAAAATGAAGAAGCTTCTCATCATCATCATCATCATCAGCATAATACTCGACTCAAGAAGGCTAGGGTTTCCATAAGAGCCAGATGTGATACACAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAAAAGATAGCAAAAGGAAATCCATGTCCTCGTTCATATTATCGTTGTACTGTCTCTTCATCTTGTCCCGTAAGAAAACAGGTTCAAAGATGTGCTCAAGACATGTCAATATTGATTACAACATATGAAGGAACTCACAACCATCCACTTCCTTCTTCAGCCACTTCCATGGCCTCTGCTACTTCCGCGGCAGCTTCCGTTCTTCGATCTTCCTCCTTGTCGTCGTTGTCGTCATCAGCAGCCACCATTGTCAACCCTAATACTAATAACACCCTAATAAGAGCACCACAAGAATTCTACTTGTTCAACTCCTCCATGATCACAACCTCCAATAATAACTTTCACCCCACAATAACTCTAGACCTTATTAATACTAAACCTCCAACAACTTCATCATCATCTTCCATGCCAAAGTATTCACCAACAAATCTTGATTTTTCTTCTTCTACTACTACTACTACTACTTTCTCTCCATTGCACTCATCATCTCATTGTTATTATTGGAACCCTAATAATAATTATGGTGGTGGACTAATCACCCAACAAAATAGAAACATAATGAACAATAATCAAGGACATTATCCCTACCAACAAAATTACATGCCCATTTTTCAACAACCTTTACCTGCAGATTATTATTATGCTTCCTCTTCTGCCCTGAATATTAATCAACAAGGAAACATCACATTACCATTGTTAACTTCACAACCGTCTAAAGGTTCCTTTGCTTCTCCCTCTAAGAACTTGCAGAAAAGGAAGTGA 1263 0.3713 MEDHHFNILESNGDNEEIGGNKDDKVESKGELEVLLRNNDDDDSSMHQKEYLFDIIHRQEKQEATKDAIHGDSEELMSLSLGVSSSLLSSNNNNREENLDTDNNNNQQLLTEMWPPSKVLKTTKNEEASHHHHHHQHNTRLKKARVSIRARCDTQTMNDGCQWRKYGQKIAKGNPCPRSYYRCTVSSSCPVRKQVQRCAQDMSILITTYEGTHNHPLPSSATSMASATSAAASVLRSSSLSSLSSSAATIVNPNTNNTLIRAPQEFYLFNSSMITTSNNNFHPTITLDLINTKPPTTSSSSSMPKYSPTNLDFSSSTTTTTTFSPLHSSSHCYYWNPNNNYGGGLITQQNRNIMNNNQGHYPYQQNYMPIFQQPLPADYYYASSSALNINQQGNITLPLLTSQPSKGSFASPSKNLQKRK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 130 144 - -
Stsc272346g00010 420 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 1 29 - -
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 400 414 - -
Stsc272346g00010 420 Coils Coil 413 420 - -
Stsc272346g00010 420 FunFam probable WRKY transcription factor 31 142 219 - -
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 87 108 - -
Stsc272346g00010 420 Pfam WRKY DNA -binding domain 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272346g00010 420 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272346g00010 420 Gene3D WRKY domain 142 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272346g00010 420 SUPERFAMILY WRKY DNA-binding domain 150 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272346g00010 420 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 61 313 IPR044810 GO:0003700
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 123 144 - -
Stsc272346g00010 420 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00010 Stsc-Chr272346 37708 40268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00010 55 289 WRKY Transcription Factor Family AT5G15130 46.094 4.25e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272346g00010 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00010 - - aip:107633968 426.017