Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00009 ATGATTAAATTTCAGCGTCAAGTACAAATTGAGAAGTGTGAAAGAGGGTGCAAATTGCAGCAGCCGCGAAACAAGAAGAAGAAGATGTTGCAGCAGTTGAAGCTACACTCACTCCCTTTATCTTCTTCCACTCTCCTTTCCCCACAAAACCGCTCCTTTTTCTCTCCAAACTCTCTTCCTTTTACTTCTGTTACTCCAAAGCCCTTCTCCATCACATGCCGCCACTCCGACCTCTTCGACAACAAGACCTTCTCCTCCACATCTTCTCCTCCTCCTTCATCTTCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCACTCCATTTACAAAGGAAAGGCTGCGCTTACCGTCACTCCTAGGCCTCCGGAGTTTGCCCCCCTCGATTCAGGGGCATTCAAAATATCTAGGGAAGGTTATGTGTTGCTTCAGTTTGCACCTGCAATTGCTTCACGCCAGTATGATTGGACTAGAAAGCAGGTGTTCTCATTATCGGTGGGTGAAATGGGAACTGTGATTAGTCTTGGAGCAAGGGAGTCTTGTGAATTTTTCCATGATCCTATGAAGGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGCCACTTGTTTAACCTCAATGTTCAAAACAAGATTGTGAATGTCGACGAAAACATCTACATCCCCATTTCAAAAGCAGAGTTAACAGTTTTGAGTTCAATCTTCAATTTTATTATGCCATACCTTCTTGGTTGGCACACCTTTGCGAACTCGATAAAGCCAGACGATTCAAGAGGAGGGAATAATGCAAACCCTACATATGGAGGAGACTATGAATGGAATAGAATGTGA 864 0.441 MIKFQRQVQIEKCERGCKLQQPRNKKKKMLQQLKLHSLPLSSSTLLSPQNRSFFSPNSLPFTSVTPKPFSITCRHSDLFDNKTFSSTSSPPPSSSSVGALPPRVYVGHSIYKGKAALTVTPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVEPLPDGSGHLFNLNVQNKIVNVDENIYIPISKAELTVLSSIFNFIMPYLLGWHTFANSIKPDDSRGGNNANPTYGGDYEWNRM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00009 287 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 67 286 IPR013742 GO:0003697|GO:0006355|GO:0006952
Stsc272346g00009 287 MobiDBLite consensus disorder prediction 266 287 - -
Stsc272346g00009 287 SUPERFAMILY ssDNA-binding transcriptional regulator domain 102 286 IPR009044 GO:0003677|GO:0006355
Stsc272346g00009 287 Gene3D Transcriptional Coactivator Pc4; Chain A 97 273 IPR009044 GO:0003677|GO:0006355
Stsc272346g00009 287 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 95 270 - -
Stsc272346g00009 287 Pfam Whirly transcription factor 110 244 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00009 Stsc-Chr272346 32301 34734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00009 62 286 Whirly Transcription Factor Family AT1G14410 68.889 1.95e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Stsc272346g00009 Whirly 1.5e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00009 K26559 - gmx:100789252 366.696