Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00007 ATGTTAGTATTATTACTACGCAGTGCCGCATCTGGTGTTTTCACTTACACATTTCCATGCAGATGCAAGCCACCACCACCACCAACAACCCTCATCCATCTCTTCCTTCCAATTCACTTCAATTCCACCATCCTTTGTTCTTCATCTGATCATTCATTTTCTACACCCAACCCAACAACCAAGTTGGGTTACACCCCTCCAGAGGAACTCTTCTCCCTGGACGTGGAACTCAACCCTAGCAAGACACAAGAGCCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAAAGAGCTTCCCTGTCCCAGTTGCAGGGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATTGAAAGATCCAGATCAGATTGTCCTAAATGTAACGGAAAGGGTATAGTGACTTGCCACCAGTGCTCTGGAGATCGTGTTATATGGGAAGAATCCATCGATGAGAAACCGTGGGAAAGAGCACGTTCAATTTCACCACTTAAAGTGAAGGAAGATGATGAAGTAGACAAGTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCGGTCACCATCTCCTGAAGTTGGATTAAAGATTAGTCGTTCATTGAAAAGTCTAAATGCAAAAACCGGTCTATTTAGCAACCGAATGAAGATTATCCACCAGGATCCCAAGCTTCAGGCTCAAAGAGTGGCCGCTATTAAGAAAGCCAAGGGAACTATTGCAGCAAGAAAGCATACTTCCATGACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGTCAGAAAAGGAGCATTGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGGCGCGAAGGGCATAGGAGACACTACTGTCCGGAACTCAAGGATTCTTCAGTTGACCGGCGATTCACATGCAAGCTATGTGGGGAAAAGGGCCACAACAGAAGAACATGCAACAAGTTAAAGATAAGCCATAGCAATGGAAGAGTTATAAAACACCATAGGTGTAAAACATGTCGCCAATATGGCCATAACCAGAGGACGTGCCCTCAAGTTTTTCCCAACAAAAGAAGGGACATTGTCTCGAATAAAGCATACAAGTGTAGGTTGTGCCGCAAAGAGGGGCACAATATTAGGACCTGTCCTAGCAGAGTTGTTACTGAAAACTCTCAAGATCAGTAG 1173 0.4382 MLVLLLRSAASGVFTYTFPCRCKPPPPPTTLIHLFLPIHFNSTILCSSSDHSFSTPNPTTKLGYTPPEELFSLDVELNPSKTQEPRSWFGPNGQYIKELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCHQCSGDRVIWEESIDEKPWERARSISPLKVKEDDEVDKLDIKLDVKKKSKRVYRSPSPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTIAARKHTSMTMKAFFSDPINRQKRSIAMKGVKFYCQNCGREGHRRHYCPELKDSSVDRRFTCKLCGEKGHNRRTCNKLKISHSNGRVIKHHRCKTCRQYGHNQRTCPQVFPNKRRDIVSNKAYKCRLCRKEGHNIRTCPSRVVTENSQDQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00007 390 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 99 144 IPR036410 -
Stsc272346g00007 390 SUPERFAMILY Retrovirus zinc finger-like domains 272 318 IPR036875 GO:0003676|GO:0008270
Stsc272346g00007 390 Pfam Zinc knuckle 363 379 IPR025829 -
Stsc272346g00007 390 Gene3D - 89 145 - -
Stsc272346g00007 390 SUPERFAMILY Retrovirus zinc finger-like domains 326 381 IPR036875 GO:0003676|GO:0008270
Stsc272346g00007 390 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 62 316 - -
Stsc272346g00007 390 SMART c2hcfinal6 274 290 IPR001878 GO:0003676|GO:0008270
Stsc272346g00007 390 SMART c2hcfinal6 301 317 IPR001878 GO:0003676|GO:0008270
Stsc272346g00007 390 SMART c2hcfinal6 332 348 IPR001878 GO:0003676|GO:0008270
Stsc272346g00007 390 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Stsc272346g00007 390 Gene3D - 328 389 - -
Stsc272346g00007 390 Gene3D - 271 318 - -
Stsc272346g00007 390 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00007 Stsc-Chr272346 26737 29260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00007 61 386 C2H2 Transcription Factor Family AT5G20220 63.690 5.85e-154 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00007 - - gmx:100800156 568.54