Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00006 ATGGAGCTTGCATCAGTGAAGAGTGAATTCAACCCAAGATGTAATAGGTTACACATTATGGTGGATGGAGGAGAGACTAATGCTTCTAGGTGTGTCAAAAGGAGGCGAAGAGATTCGTCTTCGCCTCTTCCTCTGACGGTGTTAGGGGGCAATGAACAACAAGGTGAACAGCCGGAAGCACAACAGACACCACAGGGTGGCCAATCAACCCCCAGCACCGTGAAGAGAAGCTCCAGGTTCAGAGGAGTTAGCAGGCATAGATGGACTGGAAGGTATGAAGCACATCTATGGGATAAAGGGACATGGAATCCAACTCAGAAAAAGAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTATTGGGGAGCATCAACGTTCACCAATTTCCCTGTATCAGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGAAGGAGAAGCAGTGGATTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTTGGCAACAAGTACCTCTACCTTGGAACTTACAGTACACAAGAAGAGGCAGCTCGCGCATATGATATTGCGGCAATCGAATACAGAGGCATAAATGCTGTGACAAACTTTGACTTGAGCACTTACATCAGATGGCTAAGACCAGGAGAAGCACACTCCACGGCATCCCAAGATCAAAAGGCAAGCACAGACCAGCAGATGTTTACAGCCTCTAAAGCCATCCAAGCTGCAGGAGCCGCCGAGCTATCAAACTTCAACTTCCATCCAGTCTCTGCAAGCGAATTGGACATCACCAAGAAGCAAGAGTTTTCCAAGTTTGCAGCACCTTTAAGTCCATGCTATAAGTCTTCTTCATCTTCCCCAACAGCATTAGGACTTCTCTTCAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAACCTGAATTCTGCTAATGAAGAAGCTGAAGACATTGAATTGAAATATCCACAAGAGGGCAGTGATGGGATTGGAGGGATTCTTGATATCAATGACACTAACAGTATATCTTACTTTGGCTCTTCTTCCAATATCAACAGATTACCAAACTTGGTGTCTCCAGAAAGCAGCAAAATGCCAATGTTTCCCAGAACTGTTACCCCATCACTGTGGAATGGTGCTTTCAACATTTCTGACTGA 1251 0.4412 MELASVKSEFNPRCNRLHIMVDGGETNASRCVKRRRRDSSSPLPLTVLGGNEQQGEQPEAQQTPQGGQSTPSTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGASTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGEAHSTASQDQKASTDQQMFTASKAIQAAGAAELSNFNFHPVSASELDITKKQEFSKFAAPLSPCYKSSSSSPTALGLLFKSSVFRELMQRNLNSANEEAEDIELKYPQEGSDGIGGILDINDTNSISYFGSSSNINRLPNLVSPESSKMPMFPRTVTPSLWNGAFNISD 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00006 416 Pfam AP2 domain 177 228 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 Pfam AP2 domain 78 134 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 CDD AP2 177 238 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 ProSiteProfiles AP2/ERF domain profile. 178 236 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 57 302 - -
Stsc272346g00006 416 FunFam AP2-like ethylene-responsive transcription factor 177 238 - -
Stsc272346g00006 416 SMART rav1_2 178 242 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 SMART rav1_2 79 148 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 SUPERFAMILY DNA-binding domain 78 144 IPR016177 GO:0003677
Stsc272346g00006 416 MobiDBLite consensus disorder prediction 44 78 - -
Stsc272346g00006 416 Coils Coil 332 352 - -
Stsc272346g00006 416 Gene3D AP2/ERF domain 177 238 IPR036955 GO:0003700|GO:0006355
Stsc272346g00006 416 Gene3D AP2/ERF domain 78 144 IPR036955 GO:0003700|GO:0006355
Stsc272346g00006 416 ProSiteProfiles AP2/ERF domain profile. 79 142 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 MobiDBLite consensus disorder prediction 28 82 - -
Stsc272346g00006 416 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 PRINTS Ethylene responsive element binding protein signature 218 238 IPR001471 GO:0003700|GO:0006355
Stsc272346g00006 416 SUPERFAMILY DNA-binding domain 177 238 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00006 Stsc-Chr272346 24584 26572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00006 59 257 AP2-EREBP Transcription Factor Family AT5G57390 59.155 2.25e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc272346g00006 AP2 9.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00006 - - adu:107481246 742.651