Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00005 ATGTTAGAGACGGAAAAGTACTGGAATAAACATCAAGGAGAGTTCGATGGTTACTGGAAGGAAAGAGGCCGGATCGCTGAAATTGAAAACAAGAAAGCCTATTTCCCTGATCCCTATGCCGTCTCCGGCAATTTCACCGCTGCCATTAGCGCTGATATTATTGGAAAGAATGGAGGAAGAAGGACGTTGAAAGGAAAGAACAAAGGAACTGCTTGCATGGCGACAAACCCCATTGACAGGTGCTGGAGGTGTGACCCAAACTGGGCTAATAACCGCCAAAAACTTGCAGACTGTGTTCAGGGATTCGGCAGAAACACCAAAGGAGGAAAAGGTGGAAAAATCTACGTCATCAACGACCCTTCCGGCGGTGATTTACTGGCTCCAAAACCCGGCACTATCCGGCATGCAGTTACAAGAACAGAGCCCTTGTGGATCATCTTCTCCCGGAACATGGTGATCCACCTCCAGCAAGAGCTCATCATGGCCAGCAACAAGACCATTGATGGCAGAGGTTTTGATATCCAGATTCGAAACGGCTGCGGCATCACCATCCAGTTCATCAAGAACGTGATCATCCATGGAATCAAGGTGTTCAACATCCAGGTTGGGAAAGGTGGCATGATTAGGGATTCTGAAACTCATTGGGGTCTTAGGACGCAGAGTGATGGTGATGGTATCTCCATCTTTGGTGCAAGCAACATCTGGATCGACCATGTTTCAATGAGGAACTGCTCAGATGGTTTGATTGATGCGATTATGGGTTCCACCGCCATTACTATCTCCAATGGGCATTACACTGACCACAATGAGGTGATGCTGTTTGGAGCGAGTGACAGTTACACCGGTGATAAGATCATGCAGATCACGTTGGCATTCAACCACTACGGTAAGAGGTGTGTTCAGAGAATGCCAAGAGCTAGACATGGTTTTGTTCATGTTGTTAACAATGATTATACTCATTGGGAGATGTATGCCATCGGCGGCAGCAAGAACCCCACCATCATCAGCGAGGGTAACAGGTTCATCGGCCCCGATAATCCATTCGCCAAAGAGATAACGAAGAGAGAGTATGCAGAAGAGAGCACATGGAAGAGCTGGCAATGGAGATCGATAAATGATGAATACTTGAATGGAGCGTTCTTCATTCAATCAGGGGCAGAATTGAAGAACAGACCATTCTCAAGGATGGACATGATCACAGCCAAGCCAGGAACATATGTTGGAAGGCTTACACGCTTTGCCGGTGTTCTTCCATGCAAAATTGGCGTTAAATGCTAA 1278 0.4695 MLETEKYWNKHQGEFDGYWKERGRIAEIENKKAYFPDPYAVSGNFTAAISADIIGKNGGRRTLKGKNKGTACMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTKGGKGGKIYVINDPSGGDLLAPKPGTIRHAVTRTEPLWIIFSRNMVIHLQQELIMASNKTIDGRGFDIQIRNGCGITIQFIKNVIIHGIKVFNIQVGKGGMIRDSETHWGLRTQSDGDGISIFGASNIWIDHVSMRNCSDGLIDAIMGSTAITISNGHYTDHNEVMLFGASDSYTGDKIMQITLAFNHYGKRCVQRMPRARHGFVHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPDNPFAKEITKREYAEESTWKSWQWRSINDEYLNGAFFIQSGAELKNRPFSRMDMITAKPGTYVGRLTRFAGVLPCKIGVKC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00005 425 Gene3D - 75 418 IPR012334 -
Stsc272346g00005 425 SUPERFAMILY Pectin lyase-like 76 416 IPR011050 -
Stsc272346g00005 425 SMART amb_all 150 347 IPR002022 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 98 115 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 366 390 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 222 243 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 122 147 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 158 174 IPR018082 -
Stsc272346g00005 425 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
Stsc272346g00005 425 Pfam Pectate lyase, N terminus 13 63 IPR007524 GO:0030570
Stsc272346g00005 425 Pfam Pectate lyase 159 341 IPR002022 -
Stsc272346g00005 425 PANTHER PECTATE LYASE 18-RELATED 29 422 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00005 Stsc-Chr272346 21823 23488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00005 15 425 Polysaccharide Lyase AT1G14420 58.920 2.37e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00005 K01728 - gmx:100798579 670.618