Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272346g00004 ATGCATAACCAAGCTGCCGCTTTCCTTGATCCCTTTGCCATCTCCGGCAACTTCACTGCCGCCATTAGCATGGACATTCTGGGAAAGAATGGAGGAAGAAGGATGTTGAAAGGAAAGAACAAAGGAGCTCCATGCCTGGCAACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCACACTGGGCCGATAACCGTCAAAGGCTTGCAGATTGCGTGATGGGATTCGGCAAGAACACCAAGGGAGGCAAAGGAGGCAAATACTACGTCATCACCGACCCTTCCGACGACGACTTGCTCGACCCCAAACCCGGCACTCTCCGCCATGCCGTCACAAGAACTGAGCCTCTCTGGATCATCTTCTCCCACAGCATGGTCATCACTCTCCAGCAAGAACTCATCATGGCCGGCAACAAGACCATCGACGGCAGAGGCTTCGATGTCCACATCGCACACGGTGCTGGCCTCACCATCCAGTTCATCCAGAACGTCATCATCCACGGAATCAAGATCCACAACATCGTCTCCAAATCTGGCGGCATGATTAGGGATTCCGAAACTCATTACGGCCACAGAACTCAGAGCGACGGTGACGGTATCTCAATCTTCGGCGGTAGCAACATCTGGATCGACCACGTTTCAATGAGGAACTGCTCCGATGGCTTAATTGATGTGATTATGGGTTCCACCGCCATCACCATCTCCAATGGCCATTACACTGACCACGACCACGTGATGCTTTTCGGTGCCAGTAACACCTACTCCGGCGACAAGATCATGCAGATCACGTTGGCGTTCAACCACTACGGAAAGAGGTTGGTGCAGAGAATGCCAAGAGTGAGATATGGTTTCGTCCATGTTGTGAACAATGATTATACTCATTGGGAGATGTACGCCATTGGAGGGAACCAGAACCCTACCATCATCAGCGAGGGTAACAGGTTCATAGCACCTGAGAATAGGTTCGCAAAGGAGATCACAAAGAGAGAGTATACAGAGGAGAGCGTATGGAAGAGCTGGCAATGGAGATCAATCAATGATGAGTACTTGAATGGAGCATTCTTTATTGAATCTGGACCTGAATTGAAGAACAGACCATTCTCAAGCAAGGATATGATCACAGCAAAGCCAGGAACATATGTTGGACAGCTTACACGCTATGCTGGTGTTCTTCCATGCAAGATTGGACATCCCTGTTAA 1197 0.5013 MHNQAAAFLDPFAISGNFTAAISMDILGKNGGRRMLKGKNKGAPCLATNPIDRCWRCDPHWADNRQRLADCVMGFGKNTKGGKGGKYYVITDPSDDDLLDPKPGTLRHAVTRTEPLWIIFSHSMVITLQQELIMAGNKTIDGRGFDVHIAHGAGLTIQFIQNVIIHGIKIHNIVSKSGGMIRDSETHYGHRTQSDGDGISIFGGSNIWIDHVSMRNCSDGLIDVIMGSTAITISNGHYTDHDHVMLFGASNTYSGDKIMQITLAFNHYGKRLVQRMPRVRYGFVHVVNNDYTHWEMYAIGGNQNPTIISEGNRFIAPENRFAKEITKREYTEESVWKSWQWRSINDEYLNGAFFIESGPELKNRPFSSKDMITAKPGTYVGQLTRYAGVLPCKIGHPC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Stsc272346g00004 398 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Stsc272346g00004 398 Pfam Pectate lyase 135 314 IPR002022 -
Stsc272346g00004 398 Gene3D - 48 391 IPR012334 -
Stsc272346g00004 398 SMART amb_all 123 320 IPR002022 -
Stsc272346g00004 398 PANTHER PECTATE LYASE 18-RELATED 33 395 IPR045032 GO:0030570
Stsc272346g00004 398 SUPERFAMILY Pectin lyase-like 49 389 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272346g00004 Stsc-Chr272346 17907 19406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272346g00004 32 398 Polysaccharide Lyase AT1G14420 63.978 3.63e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272346g00004 K01728 - gmx:100798579 616.305