Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272337g00002 ATGTTGCCATTTGTAGCTAGTAGTTCAAGGAGCGAAATAAGCCACTTGTCCTCAGTTCCCAGCAGCCTCTTACCAGCATTTGGCACCAACTTTGGTGAAGGGTTGTGGCAAACGTTCTTAGTTGCATTGGTGGTTTACTCTGCATGGGCATCTCCATTCGAGCTAGCCTTCAGAGAACTATCAATTGGGCCGCTGGTGCCAGTTGATCTCATTGTGGATGGCTTCTTTGCCATTGATATTGTCCTTACTTTCTTTGTGGCTTATTTGGATAACTCAACTTATCTCCTAGTTGATGACCATAAGAAGATTGCTATAAGGTGGGAACATTTCATAACTATATACCAAATTCTTACAAGCAAACGGCGGGGGCCCGAGGTCTTTGGTTTCCTAAATATGCTTAGACTATGGCGATTGAGACATGTTAGCGAATTCTTCTCAAGGTTAGAGAAAGATATACGAATTAGCTACACTACAACAAGATTTTGTAAACTTATATGTGTTACGCTATTTGCAGTGCACTTCGCAGGCTGCATGTACTTTTGGTTGGCTTTCCATCACAAAACACCGGAAAATACATGGCTCGGACACAAGGAACTACCGGATTTTAAACACAGGAGTGTCTGGTTGTGTTACATCTATTCCATGTACTGGTCTATAACAACTCTTACTACTGTTGGCTATGGAGATTTGTATGCAGTGAATACAGTGGAGAAGGTTTACAGTAGTTTATATATGCTGTTCAACATAGGCCTCACAGCATATATAATCGGAAACATGACAAATCTGGCAGTTCATAACACCGTCCGAACGTTTGCAATGAGGGATGCCTTTAACAGAGTGTTGCGATATGCAAACAAAAGTAGACTCCCAAAACGTTTGAAAGAACAAATGTTAGCGCATAAAGAATTGAAACTTAAGACGGAAGTGTTACAGCAAGAAGAAGTGCTAGGGGACCTCCCTAAAGCAATTAGATCCAGTATTGCACAGCATCTCTTCAGCAACGTGGTTGAAAAGGCATATTTATTTAAAGGAGTCTCTGATGAGTATATCACTCAACTGGTGTCAGACATGAAAGCAGAATACTACCCACCTAAGGTTGACATTATCTTGCAAAATGAGACGCCAATATATTTCTACATTCTGGTATATGGATCACTGGATCTATTTATACACAAGAATGGAACCGAACAGCTTTTGTTTAAATTAGAACCTGGAGGCATGGCGGGAGAAATAGGTGGGATGTTTAATATTCCACAACCTTTTACAGTTAGAACTAGGAGGCTCTCCCAGGTCATACGAATCAACCAACATCAGTTCAAGCAGATTGTGCAACCATTTAATAATTATGGGAAGAAAATCATCAACAACTTCGTTAAGTATTTGAGAGACCAAAGAGGCAGTGTTCTAGAAGAAATACCATACTTAGCAGATTTGCTAGGAGACCTGTATCTCGAGCATACAACACAAAATGGGGACTCACATGATGATGGACCGTGTAAAGAAGGAAGGACTCGAAATTCCAATCTACAGTCAAGCTCAGCTCCCACTAGAGTAATAATCCATGGTCATCACCCCAATGAAAAGGAAATGAGAAAAGGAGAAATGAAAAAGCTCATACTTCTGCCGAGTTCAATAGAAGATCTTTTGAGAATAGCAGAGAAAAAGTTCGGGAAAAGAGGAAGCAAGATTCTTATGGAAGATGGCTCAGAAGTACAAGAAATAAACGTCTTAAGAGATCATGACGAGTTATACATCTTTTAA 1761 0.4026 MLPFVASSSRSEISHLSSVPSSLLPAFGTNFGEGLWQTFLVALVVYSAWASPFELAFRELSIGPLVPVDLIVDGFFAIDIVLTFFVAYLDNSTYLLVDDHKKIAIRWEHFITIYQILTSKRRGPEVFGFLNMLRLWRLRHVSEFFSRLEKDIRISYTTTRFCKLICVTLFAVHFAGCMYFWLAFHHKTPENTWLGHKELPDFKHRSVWLCYIYSMYWSITTLTTVGYGDLYAVNTVEKVYSSLYMLFNIGLTAYIIGNMTNLAVHNTVRTFAMRDAFNRVLRYANKSRLPKRLKEQMLAHKELKLKTEVLQQEEVLGDLPKAIRSSIAQHLFSNVVEKAYLFKGVSDEYITQLVSDMKAEYYPPKVDIILQNETPIYFYILVYGSLDLFIHKNGTEQLLFKLEPGGMAGEIGGMFNIPQPFTVRTRRLSQVIRINQHQFKQIVQPFNNYGKKIINNFVKYLRDQRGSVLEEIPYLADLLGDLYLEHTTQNGDSHDDGPCKEGRTRNSNLQSSSAPTRVIIHGHHPNEKEMRKGEMKKLILLPSSIEDLLRIAEKKFGKRGSKILMEDGSEVQEINVLRDHDELYIF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272337g00002 586 Gene3D - 35 264 - -
Stsc272337g00002 586 Gene3D Jelly Rolls 332 470 IPR014710 -
Stsc272337g00002 586 FunFam Potassium channel KAT2 329 465 - -
Stsc272337g00002 586 SUPERFAMILY Voltage-gated potassium channels 35 262 - -
Stsc272337g00002 586 SMART cnmp_10 341 458 IPR000595 -
Stsc272337g00002 586 ProSiteProfiles cAMP/cGMP binding motif profile. 341 460 IPR000595 -
Stsc272337g00002 586 Pfam Ion transport protein 35 263 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc272337g00002 586 SUPERFAMILY cAMP-binding domain-like 270 462 IPR018490 -
Stsc272337g00002 586 PANTHER POTASSIUM CHANNEL AKT1 35 468 IPR045319 GO:0005249|GO:0006813
Stsc272337g00002 586 MobiDBLite consensus disorder prediction 489 514 - -
Stsc272337g00002 586 Pfam KHA, dimerisation domain of potassium ion channel 517 585 IPR021789 -
Stsc272337g00002 586 PRINTS EAG/ELK/ERG potassium channel family signature 80 89 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc272337g00002 586 PRINTS EAG/ELK/ERG potassium channel family signature 237 248 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc272337g00002 586 PRINTS EAG/ELK/ERG potassium channel family signature 69 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc272337g00002 586 PRINTS EAG/ELK/ERG potassium channel family signature 211 228 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc272337g00002 586 PRINTS EAG/ELK/ERG potassium channel family signature 255 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc272337g00002 586 ProSiteProfiles KHA domain profile. 517 586 IPR021789 -
Stsc272337g00002 586 Gene3D Helix hairpin bin 269 331 - -
Stsc272337g00002 586 FunFam Potassium channel KAT3 35 265 - -
Stsc272337g00002 586 Coils Coil 293 313 - -
Stsc272337g00002 586 CDD CAP_ED 341 454 IPR000595 -
Stsc272337g00002 586 Pfam Cyclic nucleotide-binding domain 361 444 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272337g00002 Stsc-Chr272337 9497 15363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272337g00002 1 586 Ion Channels AT4G32650 52.556 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272337g00002 K21867 - gmx:100794620 772.696