Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272334g00002 ATGACAAGGTTGGAGATCAGAGGCAACAAGTTTTCCGGTCCAATATTGCTTGGTGTTTCTTCTGATGTGAATCTTGTGGTTTTTGATGCAAGAAACAACATGCTTTCTGGTGAAATTCCGAGAGAATTAACGGGTGTTTCTCAGATCACAACTCTGCTGCTTGATGGGAATCAACTTTCCGGGGCACTTCCATCCGAGATAATTTCATGGAAGTCATTGAACACTTTAACTTTATCAAGAAACAATCTTTCAGGTCAAATTCCACTAGCTCTTAGTACTCTTCCTAGTCTGATTTACTTGGACTTGTCTGAAAATGATTTGTCTGGTGAAATACCAACTCAGTTACTCAACTTGAGACTTATTTTTCTCAACTTGTCTTCTAACCATCTTTCTGGGAACATACCAGATGAGTTTAACAACCTTGCATATGAAAGTAGTTTCTTGAACAATCCTAATCTATGTGCTTATGATCCAAAAGTCAACCTATCTAATTGCTTGATTAAAACCTCATCCCACTCCAGCAGTTCATCTAAGAAATTCCTTGTTGCCTTGATTCTTGTGGTCATTATCATTGTGTTGCTAGCCACCGCCTTCTTGGTCTCGTTCAAGCTGACGAAACAATGGGGTAAAAAACATTCTGGCCGTAAGCTTTCAACATGGAGGCTCACTTCATTCCAAAGGCTTGACCTCACAGAAATTAATCTCTTTTCAAGCTTGACAGATAGCAACCTTATTGGAAGTGGAGGCTTTGGGGAAGTTTACCGGATTGCTTCAAATCGGCCAGGTGAGTATGTTGCTGTGAAGAAGATTTGGAGTGACAAGGACGTGGATCACAAGCGAGAGAAAGAGTTTATGGCTGAGGTTGAAATCTTGGGCAACATTAGGCATTCTAATGTAGTGAAGCTTTTGTGTTGCTACTCAAGTGAGAACTCAAAGCTTCTTGTATATGAATACATGGAAAATCATAGCCTTGACAAATGGCTTCATGGAAAGAGTAAAAGATCCCCAACTGCTTTGTGTACACTCAACAGGACTCATGCAGTGTTGAGTTGGCCAACGAGGTTGAAGATTGCCATTGGAGCTGCACAAGGCCTATGTTACATGCACCATGATTGCTCACCATCAATCATTCATCGTGATGTTAAGTCTAGCAATATACTGCTAAACTCCGAATTCAAGGCTTGTATAGCAGATTTTGGACTTGCCACGTTGTTGTTAAAGCCAGGGGAGCCACACACCATGTCTGCTTTAGCAGGGTCTTTCGGCTACATTCCACCAGAATATGCTTATTGCAGCAAGATCAATGAGAAAGTGGATGTATACAGTTTTGGGGTTGTGCTTCTTGAGCTTGTGACTGGAAGAGAGCCTAAGTGTGGAGGAGAACATGGAAGCAGCCTAGTTGACTGGGCATGGCAGCAATACAGCGAAGGGAAGTGTCTTGCTGATGCCTTAGATGAGGATATCAAAGAAGCATGCCATGTGGAAGATATGACTAGTGTCTTCAAACTAGGCCTCATTTGCACAAGCACATTACCCTCATCTAGGCCTTCCACAAGGGATATTTTGCAAGTTCTTCGTCAATGTTGTCACCCAGGTAAGAGAGTGGCAACTGAGTTTGATATAACTCCCCTCCTTAGTGATACAAGGTACATAGCCAGTTACAAGGATAGTAATACCACAAGCGAGAACGAAGAAAGCCGCTTGTGTAGTGTGTAA 1716 0.4213 MTRLEIRGNKFSGPILLGVSSDVNLVVFDARNNMLSGEIPRELTGVSQITTLLLDGNQLSGALPSEIISWKSLNTLTLSRNNLSGQIPLALSTLPSLIYLDLSENDLSGEIPTQLLNLRLIFLNLSSNHLSGNIPDEFNNLAYESSFLNNPNLCAYDPKVNLSNCLIKTSSHSSSSSKKFLVALILVVIIIVLLATAFLVSFKLTKQWGKKHSGRKLSTWRLTSFQRLDLTEINLFSSLTDSNLIGSGGFGEVYRIASNRPGEYVAVKKIWSDKDVDHKREKEFMAEVEILGNIRHSNVVKLLCCYSSENSKLLVYEYMENHSLDKWLHGKSKRSPTALCTLNRTHAVLSWPTRLKIAIGAAQGLCYMHHDCSPSIIHRDVKSSNILLNSEFKACIADFGLATLLLKPGEPHTMSALAGSFGYIPPEYAYCSKINEKVDVYSFGVVLLELVTGREPKCGGEHGSSLVDWAWQQYSEGKCLADALDEDIKEACHVEDMTSVFKLGLICTSTLPSSRPSTRDILQVLRQCCHPGKRVATEFDITPLLSDTRYIASYKDSNTTSENEESRLCSV 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272334g00002 571 Gene3D Phosphorylase Kinase; domain 1 221 318 - -
Stsc272334g00002 571 FunFam Receptor-like protein kinase HSL1 219 318 - -
Stsc272334g00002 571 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 42 162 - -
Stsc272334g00002 571 ProSitePatterns Protein kinases ATP-binding region signature. 245 269 IPR017441 GO:0005524
Stsc272334g00002 571 ProSiteProfiles Protein kinase domain profile. 239 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272334g00002 571 Gene3D Ribonuclease Inhibitor 1 187 IPR032675 -
Stsc272334g00002 571 FunFam Kinase family with leucine-rich repeat domain-containing protein 319 540 - -
Stsc272334g00002 571 Pfam Protein kinase domain 241 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272334g00002 571 Gene3D Transferase(Phosphotransferase) domain 1 319 540 - -
Stsc272334g00002 571 SUPERFAMILY L domain-like 2 147 - -
Stsc272334g00002 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Stsc272334g00002 571 SUPERFAMILY Protein kinase-like (PK-like) 232 525 IPR011009 -
Stsc272334g00002 571 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 526 - -
Stsc272334g00002 571 SMART serkin_6 239 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272334g00002 Stsc-Chr272334 6862 8932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272334g00002 1 545 Receptor kinase-like Gene Family AT5G25930 56.856 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc272334g00002 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272334g00002 - - adu:107461025 962.6