Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272333g00008 ATGCTTCTCCAAAAATCATCTTCATCACCATCTATAGTGTTTCAAGTGAGGAGGAATACAGCAAAGCTAGTGGCTCCTGCTGGGCCCACTCCCCATGAGCTTAAGCTTCTCTCCGACATTGATGACCAACAAGGTCTACGCATCTACTATTCATTGGTTGAGTTCTTTCCTTATCAGGATTCAATGGCAGGGAAAGACCCTGTCCATGTCATCAAGGAAGCGTTATCCAAAGCACTTGTGTTGTATTATCCATTAGCTGGGAGGCTTAAGGAAGCTCCTAAGGGAAAACTTATGGTGGATTGCACGGGCGAAGGTGTATTGTTCATTGAAGCTGATGCAGATGTTACACTTGACCGGTTTGGTGTTGATCTTCTGCCTCCATTCCCGAACTTTCATGAGCTCCTCTACCATCTTCCATATTCTAATGATGGAATTATTGATTCTCCGCTCCTGCTTATTCAGATAACACGGCTCAAATGCGGTGGCTTTATCTTTGCTGTCCGTGGGAATCACACAATGTGTGATGGATATGGAATTGCTCAATTCATGAAGGCCATTGCAGAAATAGCCCAAGGTGCATCAAAGCCTTCCATCACACCAGTGTGGTGTAGGGACCTTCTTTGTGCCAGAGACCCACCAAAAGTTACATGCCTCCATCCTGAGTACCAACAACTACTGCTTCATGACTACAAAACTCCCTCTTTCAAATCCTCCCATGCTTCCTTCTTCTTTGGCCCCAAACAGATACATGCATTGCGTTGCCTCCTCCCCGATCACCTTGCTCAATCATCCTCTACCTTCGATGTCCTTACTGCATTCCTCTGGCGTTGTTTTACTGCTGCACTGTATTGGAAATATCCTAATCAAGAGGTTCTCTTGATGTGCGTAGTCAATGCACGTTTTGAACCTTGCAGATCTACCTTTAATCCTCCACTTCCTGAAGGGTATTATGGCAACGCTTTTGTGATTCCTGCGATAGCTTCCACTGCGGGGATGCTATGCGGGCGGCCCTTGAGCTATGCGTTGGAGTTGGTGAAGAAACCAAAGAAAGAAGCTAATGAGGAGTATCTGCACTCTGTTGCCGATCTAATGGCAACTAATGGAAGGCCTGGATTTTCCACGAAAGGATCGTTTATAGTTTCAGACCTCACAAAATTAGGGTTAAGTGATGTGGATTTCGGATGGGGTAAGCCATTGTATTCCGGGCTAAACAAGGCTGGTATAACTGATATTCCCGGTGAGAGCTTCTATATTCCATATACTAACTCTAAAGGAGAGCATGGTAAACTGGTCTTAATTTGCCTGCCGGAAGATGCCATGAAAAGGTTTGAGAAAGAGCTTAATGGAATACTTCACATCAAGGATGAAGAAAAACCTATCAATTCAATTTCCAAGTTGTAG 1401 0.4468 MLLQKSSSSPSIVFQVRRNTAKLVAPAGPTPHELKLLSDIDDQQGLRIYYSLVEFFPYQDSMAGKDPVHVIKEALSKALVLYYPLAGRLKEAPKGKLMVDCTGEGVLFIEADADVTLDRFGVDLLPPFPNFHELLYHLPYSNDGIIDSPLLLIQITRLKCGGFIFAVRGNHTMCDGYGIAQFMKAIAEIAQGASKPSITPVWCRDLLCARDPPKVTCLHPEYQQLLLHDYKTPSFKSSHASFFFGPKQIHALRCLLPDHLAQSSSTFDVLTAFLWRCFTAALYWKYPNQEVLLMCVVNARFEPCRSTFNPPLPEGYYGNAFVIPAIASTAGMLCGRPLSYALELVKKPKKEANEEYLHSVADLMATNGRPGFSTKGSFIVSDLTKLGLSDVDFGWGKPLYSGLNKAGITDIPGESFYIPYTNSKGEHGKLVLICLPEDAMKRFEKELNGILHIKDEEKPINSISKL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272333g00008 466 PANTHER ACYL TRANSFERASE 4 14 449 - -
Stsc272333g00008 466 Pfam Transferase family 18 446 - -
Stsc272333g00008 466 Gene3D - 12 224 IPR023213 -
Stsc272333g00008 466 Gene3D - 226 447 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272333g00008 Stsc-Chr272333 31112 33734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272333g00008 15 447 Monolignol Biosynthesis Gene Families AT5G48930 31.544 1.10e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272333g00008 K19861 K13610 gmx:100795237 605.905