LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272333g00005	ATGGTGATCCAAAAATCATCCTTATCATCTCTAGTGTTTAAAGTGAGGAAGAACCAACCAGAGTTATTGGCACCTGCTAGCCCCACTCCCCATGAACTGTTGCTTCTATCTAACCTTGATGACCAAATGGGTCTTCGGTACCAACTTCCATTAGTGCAGTTCTTTCCTTACAACCCTTCAATGGCAGGGAAAGACCCTGTTCCTGTCATTAGGGAAGCATTGTCCAAAGCTCTTGTGTTTTATTATCCATTTGCTGGGAGAATCAGGGAAGGTACTAAGGGCAAACTTATGGTGGATTGCACTGGTGAAGGTGTATTGTTCATCCAGGCAGATGCTGATGTCACACTTGACCAGTTTGGGAGTGATCTTCTGCCTCCATTCCCTTGCTTTGATGAGCTTCTTTATGATGTTCCTGGTTCTGATGAAATTATTAACTCTCCTCTCCTAATTATTCAGGTGACACATCTTAAGTGTGGTGGTTTCATATTTGTTCTCGGAATGAACCACACAATGTGTGATGGAAGTGGAATTGTTCAATTCATGAAGGCCATAACAGAAATAGCGCATGGAGCAACAAAGCCTTCCATTATCCCAGTGTGGTGTAGAGAGCTTCTTTGTGAGAGAAATCCACCGAGATTAACATGCATACACCATGAATATGACCAACTACCACTTGATAACAAAAGCCTATTCAAACCCTACCACTCTTCCTTCTTCTTTGGCCCCAAAGAGATCCATGCATTGCGCCGCATCCTCCCCCGCCACCTTGCAGATTCATCCACCTCCTTCGACGTCCTCACTGCATGCTTGTGGCGTTGTCGTACAGCTGCACTGCAATGGCAAAACCCTAATCAAGAGGTTCGCCTATTATGTATTGTGAATGCACGTTTTGGACCATGCAGATTCAACCCTCCACTGCCAGAAGGGTTTTATGGCAACGCTTTTGTGTTTCCTGCGGCGGTTTCCACGGTGGGAAATATCTGCAGAAGCCCCTTGAGCTATGCACTGGAGTTGGTGAAGAAAGCAAAGAGCGAAGGGAGAGAGGAGTATGTTCACTCTGTTGTTGACCTAATGTCCATTAATGGAAGGACTTGCTTCACTAGAACAGGATCCTTTATGGTGTCAGATCTTACAAAATCTGGATTGAGAGATGTGGATTATGGGTGGGGCAAGGCTTTGTATTCTGGAGTAGCTAAAGCTGGTCTTGGAGACCTTCCTGGTGTGAGTTTTTACGTTTCCTACACCAACTCCAAAGGAGAGAATGGTAGAGTGGTTCCAATTTGCTTGCCTAATGAAGAAGCCATGGTAAGGTTTGAAAAAGAGCTTAATGATATACTCAACAAGTTCAAGGATGAAAAAGAAGAACCTATGAATATTTTAAGTGTTAGTGGAGGACCAAAGACATTGGGCTCCGAGTCGAAGGAAGGAGATGTCGGTGGGTCCCCCTTGAACGAAGCCAAGATCATGGGTATGAGTGAGGCTGAGGGCAGGGTGGGAATTTCATAG	1506	0.4502	MVIQKSSLSSLVFKVRKNQPELLAPASPTPHELLLLSNLDDQMGLRYQLPLVQFFPYNPSMAGKDPVPVIREALSKALVFYYPFAGRIREGTKGKLMVDCTGEGVLFIQADADVTLDQFGSDLLPPFPCFDELLYDVPGSDEIINSPLLIIQVTHLKCGGFIFVLGMNHTMCDGSGIVQFMKAITEIAHGATKPSIIPVWCRELLCERNPPRLTCIHHEYDQLPLDNKSLFKPYHSSFFFGPKEIHALRRILPRHLADSSTSFDVLTACLWRCRTAALQWQNPNQEVRLLCIVNARFGPCRFNPPLPEGFYGNAFVFPAAVSTVGNICRSPLSYALELVKKAKSEGREEYVHSVVDLMSINGRTCFTRTGSFMVSDLTKSGLRDVDYGWGKALYSGVAKAGLGDLPGVSFYVSYTNSKGENGRVVPICLPNEEAMVRFEKELNDILNKFKDEKEEPMNILSVSGGPKTLGSESKEGDVGGSPLNEAKIMGMSEAEGRVGIS	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272333g00005	501	Coils	Coil	435	455	-	-
	Stsc272333g00005	501	Gene3D	-	10	222	IPR023213	-
	Stsc272333g00005	501	MobiDBLite	consensus disorder prediction	459	501	-	-
	Stsc272333g00005	501	PANTHER	ACYL TRANSFERASE 4	13	445	-	-
	Stsc272333g00005	501	Pfam	Transferase family	14	443	-	-
	Stsc272333g00005	501	Gene3D	-	234	448	IPR023213	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272333g00005	Stsc-Chr272333	13127	18051	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272333g00005	14	445	Monolignol Biosynthesis Gene Families	AT5G48930	29.646	1.46e-43	157

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272333g00005	K19861		K13610	gmx:100795237	703.36