Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272333g00004 ATGTTGGATTATTTTAGCCTTGATTTCAAATATGTAGCTGCAGCAGGCCTAGCCTTAGTTATAGCAGTGGTAGTTGCCGGAAGATATGGCCGGAGAAGAAAGCGCCACCGCGTTGCGGGAACTGTTTTCCACCAACTACTCAACTTCAACAGGCTACATGATTACATGACAGATCTTGCAAGAGAGAACAGCAGTTATAGGCTGCTTAGCTTATTAAGCAGTGAGGTGTACACTTCAGACCCCACCAATGTGGAATATATCCTCAAGACTAACTTTTCAAACTATGGCAAGGGAAAGTATCAGTATGAAATTCTGAAGGACCTCTTAGGAGATGGGATATTCACAGTGGACGGAGAGAAGTGGAGACATCAGAGAAAGGCAGCTAGCTACCAATTTTCCACAAAGCTTTTGAGAGATTACAGCAGTTCGGTTTTCAAATCGAACGCTGTAAAACTTGCAACAATAGTGTCTGAAGCAGCAATCTCAAATCAGGCAATTGAAATCCAAGACTTACTTTTCAAATCAACCATGGACTCAGTATTTAAAATAGTACTAGGTGTGGAGCTGGACACTATGGGTGGAACATATGAAGAAGGCACCAAATTCTCCACTTCTTTTGATGATGCAAGTGCAATCACTATACTCAGGTATATTGACATTTTCTGGAAAGCGAAGCGGTTTTTGAACGTAGGACAAGAAGCACTGCTGAAGAAACATGTCAGAGTTGTGGATGAATTTGTGTATAATGTGATTAAAACCAAGACTGAACAAGTCCATAACCAAGATGATAAGGCTGTGAGGAAGGACCTTTTGTCAAGGTTTATAGAATTGGATGAGACCGATCCGAAGTACCTGAAAGACATCATCCTGAGTTTCATCATAGCTGGAAAAGATACAACAGCAACTACTCTCTCATGGTTCCTTTACAGGCTATGCAAGCTTCCTCATGTGCAGGAAAAGATTGCACAAGAAGTCAAAGATGCAACAGGGTTATCAGATTTGTCAAAGCCTGAGGAGATTGCAGCTAATATAACTGAAGAAGCTCTTGAAAAAATGCAGTATCTACATGCAGCTTTGACAGAGACACTAAGACTCTACCCTGCTGTTCCATGGGATGCTAAGATCTGTTTCTCAGATGATGTGTGGCCAGATGGATTCTATGTCAAGAAAGGTGATCTTGTGGCATACCAACCTTATGCCATGGGAAGGATGAAATCATTGTGGGGTAATGATGCTGAAGAGTTCAAACCAGAAAGGTGGCTTGACATAGATGGAAATTTTCAGCAAGAAAGCCCTTTCAAATTCACAGCTTTCCAGGCGGGTCCAAGACTTTGTCTTGGGAAGGATTTCTCATACAGACAGATGAAAATCTTCTGTGCTGTCCTCTTAGGAAGCTACAAATTCAAGTTGGTTGATGAACGCAAATCAGTACATTACAGAACTTCACTTACTCTGCATCTGGATGGAGGTCTGCATCTGAATGCTTATAGAAGAATTGGATATTCAAATTCATAG 1515 0.4139 MLDYFSLDFKYVAAAGLALVIAVVVAGRYGRRRKRHRVAGTVFHQLLNFNRLHDYMTDLARENSSYRLLSLLSSEVYTSDPTNVEYILKTNFSNYGKGKYQYEILKDLLGDGIFTVDGEKWRHQRKAASYQFSTKLLRDYSSSVFKSNAVKLATIVSEAAISNQAIEIQDLLFKSTMDSVFKIVLGVELDTMGGTYEEGTKFSTSFDDASAITILRYIDIFWKAKRFLNVGQEALLKKHVRVVDEFVYNVIKTKTEQVHNQDDKAVRKDLLSRFIELDETDPKYLKDIILSFIIAGKDTTATTLSWFLYRLCKLPHVQEKIAQEVKDATGLSDLSKPEEIAANITEEALEKMQYLHAALTETLRLYPAVPWDAKICFSDDVWPDGFYVKKGDLVAYQPYAMGRMKSLWGNDAEEFKPERWLDIDGNFQQESPFKFTAFQAGPRLCLGKDFSYRQMKIFCAVLLGSYKFKLVDERKSVHYRTSLTLHLDGGLHLNAYRRIGYSNS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272333g00004 504 CDD CYP86A 76 491 - -
Stsc272333g00004 504 PANTHER CYTOCHROME P450 25 491 - -
Stsc272333g00004 504 Pfam Cytochrome P450 45 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 Gene3D Cytochrome P450 34 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272333g00004 504 SUPERFAMILY Cytochrome P450 38 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272333g00004 Stsc-Chr272333 9171 11774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272333g00004 17 498 Cytochrome P450 AT2G45510 52.953 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272333g00004 - - rvl:131334074 662.529