Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272328g00001 ATGGTTTTGTTGATTCAATGCCAACAGGTGCAAAAGGCAGGATCTGTAGGAAGATCAATTGATGTTACAACTTTCAAGAACTATGAAGAGCTGATCCGCGCGATTGAATGCATGTTTGGACTAGATGGTCTGCTGAATGACACCAAAGGTTCCGGGTGGAAACTGGTGTATGTGGATTATGAGAGTGATGTTCTTCTTGTTGGGGATGATCCTTGGGAGGAATTTGTCGGCTGTGTTCGATGCATCAGAATCTTATCGCCTTCGGAAGTTCAACAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGGAGCCTTGCAAGGGATCAATGTTTGA 336 0.4435 MVLLIQCQQVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGINV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272328g00001 111 ProSiteProfiles PB1 domain profile. 5 89 IPR000270 GO:0005515
Stsc272328g00001 111 FunFam Auxin response factor 3 94 - -
Stsc272328g00001 111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 95 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc272328g00001 111 SUPERFAMILY CAD & PB1 domains 18 84 - -
Stsc272328g00001 111 Gene3D - 3 94 - -
Stsc272328g00001 111 Pfam AUX/IAA family 48 93 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272328g00001 Stsc-Chr272328 40929 41367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272328g00001 9 110 B3 DNA Binding Superfamily AT1G19850 83.333 5.96e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc272328g00001 AUX_IAA 9.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272328g00001 K14486 - ahf:112754458 209.149