Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272326g00004 ATGGCCTCTTGTGAAAGCAGTGGTGATAGGATGAATGTAGGAGCTTCGGATTTTGATGGTAACGATGGCAGCAAGAAGAAAAGGAAGCAATCATGCAACTGCCATAAGAGTCAATGCTTGCAACTATACTGTGAATGCTTTAGTTCTGGAAACTTTTGCAACGACTATTGTTCTTGCAAAGCGTGCATGAATAATGTGGAGAACAAGGATTGTGTGAAGGAGAAGAAGAAGGAAATCGAATCGCGGAATCCACACGCGTTTCAATGCAAGATTATTCATGCCCAGAATGAGTCAGCAAGGCACAGAAAAGGTTGCTGCTGCAACAAGACGAAGTGCGATAATAAGTACTGCCCTTGCTTCAGAGCTGATGTTGGCTGCTCTCGTCTGTGTCGGTGTCAAGGTTGCAAGAATGTTCATGGAAGCAAAAAAGATGAACATCAACAAGAACAAGAAGAACGTGTTTTGTCTAATAATAATAATAATGGCAGCAACAACAATGGAATGTTGAATAACGGATCATCTTCTCAATCTCATCATCCAGTTGCCAACAACGATAACTTCTTACCCCATCATGAGTTTCCTGAACCAGATGTGGATATCGGCAACAATGAGAATGGAATCTATAGCAACAATGTAAATATGCCATTGAATCAAGTCAGTGTTGCTCCTGCTGATTCTTATTATAATTATAATAGTTTTGGAAACTTCTTTCAAAACCATGTTGCTGCATCTGATTATCATCACCCTCTCGCCTCAAGCCAGATTTTGTCCTTCGAAAACAACACTGTTGAGCAGCAGAATATTAATATGATGCTTGATCTTCTTAATTTTCAGCAACCACCATCTTTTCTGGGGCCTCATGGTATCTATAATAATCATAATAATGTTGCTGATGAGCCCTCCTCATCAATTCATAATCTCTCGACAATGGCGCCAATAATACAGAGCACTCATCAGCAGTATAGACCTCAAACTCGGAGTTATGGTAATTATCATCAAGAAGAATCAGGGGCAATGAATCATTCCCACCAACTATTAGTCCCGGTTAGTGCACAACGCGGTTCGAATGATGCAACAAACATGCACACGCCTAGTGATCCTATCCACCCTCATGGGCCACCTCCTTCTTCTGGTAACAATGCTGATTATGCAGAACTACCGCATGGAAATATGTTTTTGCAGCACAATAATAAGCGCCATTAA 1203 0.4098 MASCESSGDRMNVGASDFDGNDGSKKKRKQSCNCHKSQCLQLYCECFSSGNFCNDYCSCKACMNNVENKDCVKEKKKEIESRNPHAFQCKIIHAQNESARHRKGCCCNKTKCDNKYCPCFRADVGCSRLCRCQGCKNVHGSKKDEHQQEQEERVLSNNNNNGSNNNGMLNNGSSSQSHHPVANNDNFLPHHEFPEPDVDIGNNENGIYSNNVNMPLNQVSVAPADSYYNYNSFGNFFQNHVAASDYHHPLASSQILSFENNTVEQQNINMMLDLLNFQQPPSFLGPHGIYNNHNNVADEPSSSIHNLSTMAPIIQSTHQQYRPQTRSYGNYHQEESGAMNHSHQLLVPVSAQRGSNDATNMHTPSDPIHPHGPPPSSGNNADYAELPHGNMFLQHNNKRH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272326g00004 400 ProSiteProfiles CRC domain profile. 28 140 IPR005172 -
Stsc272326g00004 400 MobiDBLite consensus disorder prediction 143 204 - -
Stsc272326g00004 400 MobiDBLite consensus disorder prediction 153 183 - -
Stsc272326g00004 400 SMART CXC_2 27 68 IPR033467 -
Stsc272326g00004 400 SMART CXC_2 100 141 IPR033467 -
Stsc272326g00004 400 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 30 65 IPR005172 -
Stsc272326g00004 400 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 103 137 IPR005172 -
Stsc272326g00004 400 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 28 305 IPR044522 GO:0003700
Stsc272326g00004 400 MobiDBLite consensus disorder prediction 1 25 - -
Stsc272326g00004 400 MobiDBLite consensus disorder prediction 354 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272326g00004 Stsc-Chr272326 26009 27608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272326g00004 25 215 CPP Transcription Factor Family AT3G22760 35.776 8.99e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc272326g00004 TCR 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272326g00004 K21776 - ahf:112771246 226.868