Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc272324g00003 | ATGGAGGAAGAAGCTGATACCTACAATCCTCGTACCGTGGAAGAGGTATTCCGTGATTTCAAGTCTCGCCGTACTGCTTTGATCAAAGCCCTCACCACCGATGTTGACGAGTTCTTCAAGCAGTGTGATCCCGAAAAGGAAAATCTTTGCCTGTACGGATTTCCTACCGAGGAGTGGGAAGTCAATCTGCCTGTTGAGGAGGTGCCTCCAGAGATTCCAGAGCCAACATTGGGTATTAACTTTGCCAGAGATGGGCTTGATAAACAGGAATGGCTGTCTTTGGTTGCTGCTCATAGTGATGCTTGGATACTCGCTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGACAGGGCTGATAGGAAGAGACTATTTACTATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACAGGAATGGGAAAGACACCAGCTTCTAATCATAGCAGTAACAAATCCAAATCAAACTCTAAGAAAGGTTCTGAATCTAAGCCGAAGAATTCAAAGGCAACACAATCAAAGGACAAGGATGGCGAAGAACAAGGAGGAGATGTTCCTTGTGGGGCATGTGGAGAGAGCTACGACGACGGGTTCTGGATTTGCTGTGACATATGCGAGAAGTGGTTCCATGGAAAGTGCGTCAAGATAACCCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACAGTAA | 723 | 0.4523 | MEEEADTYNPRTVEEVFRDFKSRRTALIKALTTDVDEFFKQCDPEKENLCLYGFPTEEWEVNLPVEEVPPEIPEPTLGINFARDGLDKQEWLSLVAAHSDAWILAVAFYFGARVGFDRADRKRLFTMINDLPTIFEVVTGMGKTPASNHSSNKSKSNSKKGSESKPKNSKATQSKDKDGEEQGGDVPCGACGESYDDGFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARQ | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc272324g00003 | 240 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 236 | IPR019787 | - | |
Stsc272324g00003 | 240 | SUPERFAMILY | FYVE/PHD zinc finger | 178 | 237 | IPR011011 | - | |
Stsc272324g00003 | 240 | FunFam | PHD finger alfin-like protein | 180 | 235 | - | - | |
Stsc272324g00003 | 240 | Pfam | PHD-finger | 188 | 236 | IPR019787 | - | |
Stsc272324g00003 | 240 | MobiDBLite | consensus disorder prediction | 142 | 184 | - | - | |
Stsc272324g00003 | 240 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 233 | IPR019786 | - | |
Stsc272324g00003 | 240 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Stsc272324g00003 | 240 | PANTHER | CPG BINDING PROTEIN | 9 | 240 | IPR045104 | GO:0006355|GO:0042393 | |
Stsc272324g00003 | 240 | Pfam | Alfin | 12 | 140 | IPR021998 | GO:0006355|GO:0042393 | |
Stsc272324g00003 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 235 | IPR013083 | - | |
Stsc272324g00003 | 240 | SMART | PHD_3 | 187 | 234 | IPR001965 | - | |
Stsc272324g00003 | 240 | CDD | PHD_AL_plant | 187 | 236 | IPR044104 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc272324g00003 | Stsc-Chr272324 | 30924 | 35921 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc272324g00003 | 1 | 239 | Alfin-like Transcription Factor Family | AT3G42790 | 70.400 | 1.52e-114 | 326 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Alfin-like | Stsc272324g00003 | Alfin | 3.7e-65 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc272324g00003 | K26274 | - | rcu:8258558 | 345.895 |