Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272324g00001 ATGAACTTGAAGAAGAGCCCTCAAATTCATGAGAAGGAGAGAGGAGCATTATCCCCATACTACTACTCTAGGGAATTATCATCATCATCATCAATATCATCATCTAAGGCAAGTTCTATAATAAGGTCCAATAATAATAGTAAAAATAAGCCATCACATATTAATAATAAGAAGTATGTTGAGCCACCAAGCCCTGCTTTATCTTATGGTTGTTGTGGAGGATTCACCAGTAATAATAATAATAATGTCAAGAACAAGAATAATGCCACTTCTACTACTAATAATGGATCCATGCCATCAAATACCTCACAACAAAATCACCACCAAGAGCTTTACCAAAGACTCGAATCTAAGGTGGCAGATTTGGAGAAGGAAGTGCAAAAGCAAGCAGAACTACGAGCAATGTACAGGAAAAGAATGGAAAGAACACAAGATTACTTGAGGTATTGCCTTCAAATAGCACAAGATAATGGAATATTGGACCTTATTGTTCCACATTCTCCTCAACTTTTAACCTCATCCTCCATTATTGGAAGCCCTCAAGTTCCAATCCCCAACAATGGTACTACTCCTTCCCATAACCACCAACCTCATCTTGCTAAGATCATAGATCAAGCCAAAATCAATGGATGGTACATTGATCCTATTGAGATTCAACTGCAAGAAAAAATAGGGGAAGGAAGCACAGCAAACATTTACATGGCAACATGGCGAGGGTTTCAAGTAGCAGTGAAGTGCTTATCGGAAGAGTTCTTCAACGCAAACCAAAATGGTGTCGTTTTTTTCGCTCAAGAGCTCGAAACCCTCTCCAAACAACGCCATAGATTCGTTCTTCAGCTAATGGGCGCGTGCTTGGACCCTCCGCAGCACGCGTGGATCGTAACCGAATACTTAACTACGAATCTGAAAGAGTATTTGCATGGCCCTGGCAATAGAAGAAGCAAAGAGAGAGTGATACCACTGGCACCCTTTAGAGAGAGGGTTGTGATGGCATTGGAGATAGCCCAAGCCATGCAATATTTGCATGAGCAAAACCCTAAAGTTGTTCATCGCGATTTGAAACCTAGTAATATTTTTTTAGATGATGTGTTGCATGTTAGGGTTGCGGATTTTGGCCATGCTCGATTCTTAGGTCATGACGAGATGGCTCTTACCGGAGAAACAGGAACATATGTGTATATGGCACCTGAGGTGATCAAGTGTGAACCTTACAATGAAAAATGTGATGTTTACAGTTTTGGAATTATACTAAATGAGCTTATAACTGGAAAACATCCATACATTGAGACAGAATATGGTCCCACCAAG 1308 0.4029 MNLKKSPQIHEKERGALSPYYYSRELSSSSSISSSKASSIIRSNNNSKNKPSHINNKKYVEPPSPALSYGCCGGFTSNNNNNVKNKNNATSTTNNGSMPSNTSQQNHHQELYQRLESKVADLEKEVQKQAELRAMYRKRMERTQDYLRYCLQIAQDNGILDLIVPHSPQLLTSSSIIGSPQVPIPNNGTTPSHNHQPHLAKIIDQAKINGWYIDPIEIQLQEKIGEGSTANIYMATWRGFQVAVKCLSEEFFNANQNGVVFFAQELETLSKQRHRFVLQLMGACLDPPQHAWIVTEYLTTNLKEYLHGPGNRRSKERVIPLAPFRERVVMALEIAQAMQYLHEQNPKVVHRDLKPSNIFLDDVLHVRVADFGHARFLGHDEMALTGETGTYVYMAPEVIKCEPYNEKCDVYSFGIILNELITGKHPYIETEYGPTK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272324g00001 436 PIRSF ILK 177 433 - -
Stsc272324g00001 436 PIRSF ILK 54 160 - -
Stsc272324g00001 436 SMART serkin_6 218 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272324g00001 436 Pfam Protein kinase domain 220 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272324g00001 436 MobiDBLite consensus disorder prediction 22 53 - -
Stsc272324g00001 436 MobiDBLite consensus disorder prediction 1 61 - -
Stsc272324g00001 436 ProSiteProfiles Protein kinase domain profile. 218 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272324g00001 436 Gene3D Transferase(Phosphotransferase) domain 1 300 434 - -
Stsc272324g00001 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Stsc272324g00001 436 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 429 - -
Stsc272324g00001 436 ProSitePatterns Protein kinases ATP-binding region signature. 224 245 IPR017441 GO:0005524
Stsc272324g00001 436 Gene3D Phosphorylase Kinase; domain 1 199 299 - -
Stsc272324g00001 436 MobiDBLite consensus disorder prediction 82 110 - -
Stsc272324g00001 436 SUPERFAMILY Protein kinase-like (PK-like) 209 430 IPR011009 -
Stsc272324g00001 436 Coils Coil 105 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272324g00001 Stsc-Chr272324 683 3759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272324g00001 182 427 MAP Kinase Kinase Kinase AT4G38470 38.462 1.02e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Stsc272324g00001 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272324g00001 - - ahf:112757851 624.394