Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272323g00001 GTGAGTTTAAGCATCTTAGCACTATTCGTGGTGGCCTTTAATGCCTATTACGGATTGAGAAAAAGGAAGCTCAACAAACTTAAAGAGCAGTTTTTTCAACAAAATGGTGGTCTATTGTTGCAACAAAAAATTGCCAAACATAGAGGTTCAATTCAAACAACTAAAATCTTTAGCATAAAAGAGCTAAAAAAGGCCACCAACAACTTTGATGAAGACAAGATCTTAGGCCGGGGAGGCCAAGGAATAGTTTACAAAGGAGTCTTACAAGACAATACAATTGTGGCAATCAAAAAGTCCAAAATCAATGATCAAAGACAGATTGAACAATTCATCAATGAAAGACACCCATTGCTTGTTTATGAGTTCATTCAAGGTGGTACTCTTTATGATCATCTTCATGGTCAGAACCAATCTCTAAGGCTTAATTGGAAAGCAAGATTGAGAATAGCAGCAGAAACTGCTGGTGCCTTGGCATACTTGCATTCTGCAACTTGTCCACCCATCATACACAGAAATGTGAAGACTACTAACATACTTCTTGATCATAATCTAAAGGCAAAGGTTTCTGATTTCGGAGCTTCAAAGATTGTTCCTCTTGATAATACTGAATTATCCACCTTGGTGAAAGGAACTGTGAGGTATCTTGACCCGGAATACTTCCACACAAGCTACTTAACAGAAAAGAGTGATGTTTATAGCTTCGGTGTCATTCTAGCAGAGCTGCTAACGGGACGAAAAGCGCTTTGCTTTGAGCTGACTGAGAATGATAGAAACCTTGCAACGTATTTTGTTTCTTCAATGAATCAGGGTCGTTTACATGACATTCTGGACAAAGCCATAATTGAAGAGGCAAAGCCCGAGCAACTAATGGAATTTGCGAATATGTCAAAACGATGCTTAAGGGTGAAGGGAGAAGAAAGACCTACCATGAAAGAAGTGGCAGCTGAACTTGAGGGACTGAGAATAATGGAAAAGAACAGGTGGGAAAGTGAAAGATCATCTTTGGAAGAGACTAAAATTTTGATCAATGCAGCAGCATCATCATCATCATCATCATCTTCCTCCGCTTTTTACAGTGAAAGCATAGGTCAGATTACTGTTTCATTAGGTGGAAGGTGA 1119 0.3905 VSLSILALFVVAFNAYYGLRKRKLNKLKEQFFQQNGGLLLQQKIAKHRGSIQTTKIFSIKELKKATNNFDEDKILGRGGQGIVYKGVLQDNTIVAIKKSKINDQRQIEQFINERHPLLVYEFIQGGTLYDHLHGQNQSLRLNWKARLRIAAETAGALAYLHSATCPPIIHRNVKTTNILLDHNLKAKVSDFGASKIVPLDNTELSTLVKGTVRYLDPEYFHTSYLTEKSDVYSFGVILAELLTGRKALCFELTENDRNLATYFVSSMNQGRLHDILDKAIIEEAKPEQLMEFANMSKRCLRVKGEERPTMKEVAAELEGLRIMEKNRWESERSSLEETKILINAAASSSSSSSSSAFYSESIGQITVSLGGR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272323g00001 372 Pfam Protein tyrosine and serine/threonine kinase 112 317 IPR001245 GO:0004672|GO:0006468
Stsc272323g00001 372 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 10 328 IPR045274 GO:0007166
Stsc272323g00001 372 ProSiteProfiles Protein kinase domain profile. 25 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272323g00001 372 Gene3D Transferase(Phosphotransferase) domain 1 123 346 - -
Stsc272323g00001 372 Gene3D Phosphorylase Kinase; domain 1 40 122 - -
Stsc272323g00001 372 SUPERFAMILY Protein kinase-like (PK-like) 52 325 IPR011009 -
Stsc272323g00001 372 FunFam Wall-associated receptor kinase 2 123 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272323g00001 Stsc-Chr272323 8867 10048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272323g00001 19 366 Receptor kinase-like Gene Family AT1G21230 49.865 6.60e-121 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Stsc272323g00001 PK_Tyr_Ser-Thr 5.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272323g00001 - - ahf:112763858 576.244