Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272321g00001 ATGGCTGGGATTTGTTGCGGTGTTGTTGGAGAAGGAGAGACTCCAGCTCCAATTGAGCCAACTTCTTCACGGCCCTTATCTCGCCGGAGTTTGGACCTCTTGCCGTTGAAATACATTGCCAACATGGCAGTTCCACCGGCCGAGAGCAGCCGTAAGCGGCAGAAGCTGGATCTCTCTGATTCTCCGGCGAGGGAGTGCGTGAACTCAGTTGAGAGTTCCGAATCAAGCGGTAGTGAACTCAAAGAAGAGCTTAACACCAAGAAGGAATCAGCAAAACACGAAGAAGCAAGTAGTAGTTCGGAAGTGGCAACGTTAATTCCCACGGAGAAAAACGAGGTTGTTGAAGAGTGTCCCAAGTATGGAGTCACGTCGGTATGTGGCAGGAGGAGGGACATGGAAGACGCAGTTTCGGTTCGTCCCTCGTTCTGCCAAGTTCAAAACGGCACAAACAAAGACGATCAAAACGACGCGCCGTTTCACTTCTTTGGTGTATACGACGGTCACGGATGTTCACATATCTGGTGCGAGCTCCAAACACCTCACTGCGACGCCGTCGGCTCCACTGCCGTCGTCGCCGTCGTCACGCCGGAGAAAATCGTCGTCTCCAACTGCGGCGACTCTCGCGCCGTCCTCTGCCGTAACGGTGTCGCCATCCCCCTCTCCTCTGATCACAAGCCCGACCGACCGGACGAGTTGCACCGGGTCCAGAACGCCGGTGGGCGCGTGATCTATTGGGACGGTCCAAGAGTGCTTGGGGTGCTGGCCATGTCAAGAGCCATAGGCGATAATTATTTGAAGCCTTATGTGATTTCGGAACCGGAGGTGACGGTTACGGATCGGAGTGATGAAGACGAGTGTTTGATTCTGGCGAGTGATGGGCTTTGGGATGTGGTTTCTAACGACACGGCGTGTGGCGTCGTTAGGATGTGTCTTAAGGCGCAGAAGGTGCCGTCGCCACCGGGGTCTCCGGGGAGGGATGTGGCGGCGTCGGCGGATGGATCCGACAAGGCGTGCTCCGACGCTTCGATACTTCTGACGAAGCTGGCTTTGGCGAGGCACAGCTCCGACAATGTTAGCGTGGTGGTGGTTGATTTGAGGAGAGATCAACGTCAACAACAAAGTTGA 1125 0.552 MAGICCGVVGEGETPAPIEPTSSRPLSRRSLDLLPLKYIANMAVPPAESSRKRQKLDLSDSPARECVNSVESSESSGSELKEELNTKKESAKHEEASSSSEVATLIPTEKNEVVEECPKYGVTSVCGRRRDMEDAVSVRPSFCQVQNGTNKDDQNDAPFHFFGVYDGHGCSHIWCELQTPHCDAVGSTAVVAVVTPEKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELHRVQNAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRSDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKVPSPPGSPGRDVAASADGSDKACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQQQS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272321g00001 374 MobiDBLite consensus disorder prediction 315 334 - -
Stsc272321g00001 374 PANTHER PROTEIN PHOSPHATASE 88 365 IPR015655 GO:0004722|GO:0006470
Stsc272321g00001 374 MobiDBLite consensus disorder prediction 1 27 - -
Stsc272321g00001 374 FunFam Protein phosphatase 2C 50 176 373 - -
Stsc272321g00001 374 MobiDBLite consensus disorder prediction 76 96 - -
Stsc272321g00001 374 Pfam Protein phosphatase 2C 179 357 IPR001932 -
Stsc272321g00001 374 Gene3D - 173 374 IPR036457 -
Stsc272321g00001 374 SMART PP2C_4 107 363 IPR001932 -
Stsc272321g00001 374 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Stsc272321g00001 374 MobiDBLite consensus disorder prediction 42 102 - -
Stsc272321g00001 374 ProSiteProfiles PPM-type phosphatase domain profile. 119 365 IPR001932 -
Stsc272321g00001 374 CDD PP2Cc 119 316 IPR001932 -
Stsc272321g00001 374 Gene3D - 111 172 IPR036457 -
Stsc272321g00001 374 SUPERFAMILY PP2C-like 118 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272321g00001 Stsc-Chr272321 34412 36251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272321g00001 97 372 PP2C-type Phosphatase Gene Family AT1G07430 54.416 1.63e-118 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272321g00001 K14497 - gmx:100796161 434.876