Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272320g00004 ATGGATAAGGACAAATCCCCTGGTCATGGTGGAGGTTTCCCTCTTCCTTCTGGCAGTTTTTCTGGTTTCTCAGCTGCTGCAACCCCTTTTAATATGAAATCAGATTTACCATCTTCATCAGCATCGTTTCGTCCTCTGCCAATTCCGGCTGCAACCTCGGATTCTGTTAGTTTTAGTCATGACATTAGCAGAATGCCTGATAATCCTCGGAGAAATCGAGGCCACAGACGTGCTCACTCCGAGATTCTCACTTTGCCTGATGATATTAGCTTTGAAAATGACCTTGGCATAGTTGGAGGAGGTGCTGATGGCCCCTCATTCTCTGATGACACTGAGGAAGACTTGCTCTCCATGTATCTTGATATGGATAAATTCAATTCGCCGGATGCTACATGCGAGTTTGGAATCGGGGAGACTTCAATTGGTGGTGCAGCAACAGCAGCAGCAGTAGCATTGAGTTCCACATTGGCATCAGGAGCCGCTGCCACCTCTTCAGAAGACAGCACTGTTGTTGGGACTAATGGAAGGCCTAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGTTCGACAACCATCAAACCTGAGATTTTAGTCTCCGGTTCGGAAGAGGCCTCAGCAGTTGATTCCAAGAAGGCTATTTCGGCTGCAAAGCTTGCCGAGCTTGCCTTAATTGATCCAAAGCGTGCTAAGAGGATATGGGCAAACCGACAGTCTGCTGCTAGGTCGAAGGAAAGGAAGATGCGCTACATTGCCGAGCTTGAAAAGAGGGTACAGACATTGCAGACTGAAGCAACATCCTTGTCTGCACAACTGGCTATCTTGCAGAGGGATACAGGTGGACTGAATGCTGAAAACAGTGAGCTGAAATTGCGGGTACAATCGATGGAGCAACAAGTTCACTTGCAAGATGCATTGAATGATGCATTAAAAGAGGAAATTCAGCATTTGAGAGTAATAACCGGACAAGCTTTGCCAAATGGAGGAACACCTATGAACTTCGCTTCATCGGTTGGAGGAGAACAACAATTCCAATCCAAAAATCAGTCCATGAACACCCTTTTAGCTGCCCAACAGTTTCAGCAACTCCAAATTCGCTCGCGGAAGCAACAGCATCAACAGGTATTCCAGCACCATCAACCTCAGAATCTGCAGCAGTTTCAGCAGCCACAACAGGAAAAGTAG 1185 0.4709 MDKDKSPGHGGGFPLPSGSFSGFSAAATPFNMKSDLPSSSASFRPLPIPAATSDSVSFSHDISRMPDNPRRNRGHRRAHSEILTLPDDISFENDLGIVGGGADGPSFSDDTEEDLLSMYLDMDKFNSPDATCEFGIGETSIGGAATAAAVALSSTLASGAAATSSEDSTVVGTNGRPRVRHQHSQSMDGSTTIKPEILVSGSEEASAVDSKKAISAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELEKRVQTLQTEATSLSAQLAILQRDTGGLNAENSELKLRVQSMEQQVHLQDALNDALKEEIQHLRVITGQALPNGGTPMNFASSVGGEQQFQSKNQSMNTLLAAQQFQQLQIRSRKQQHQQVFQHHQPQNLQQFQQPQQEK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272320g00004 394 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 391 - -
Stsc272320g00004 394 FunFam probable transcription factor PosF21 227 280 - -
Stsc272320g00004 394 Gene3D - 227 279 - -
Stsc272320g00004 394 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
Stsc272320g00004 394 MobiDBLite consensus disorder prediction 368 394 - -
Stsc272320g00004 394 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Stsc272320g00004 394 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700|GO:0006355
Stsc272320g00004 394 MobiDBLite consensus disorder prediction 167 190 - -
Stsc272320g00004 394 SUPERFAMILY Leucine zipper domain 228 278 IPR046347 GO:0003700|GO:0006355
Stsc272320g00004 394 Coils Coil 293 313 - -
Stsc272320g00004 394 Coils Coil 244 278 - -
Stsc272320g00004 394 Pfam bZIP transcription factor 228 276 IPR004827 GO:0003700|GO:0006355
Stsc272320g00004 394 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272320g00004 Stsc-Chr272320 7703 10392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272320g00004 20 357 bZIP Transcription Factor Family AT1G06070 67.257 8.23e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc272320g00004 bZIP_1 3.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272320g00004 - - pcin:129313665 457.603