Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272314g00004 ATGTATAACAGCAGCAATAACAGTAACAGCAACATCCTGGCGTCTCGGACGAGCTCGCGGTCGGTGACGGAGACGGTTAACGGTTCTCACAAGTTCGTAATCAAAGGTTACTCTCTGGCGAAGGGGATCGGAGTTGGGAAGCACATAGCGAGCGAGACCTTCACCGTTGGAGGCTACCAGTGGGCCATATACTTCTACCCTGACGGCAAGAATCCCGAGGACAACTCCGCCTATGTCTCCGTCTTCATCGCCCTCGCCAGTGACGGCACCGACGTCAGGGNNNNNNNNNNTCAGAGCGGCAACGGCAAGCACAAGGTCCACAGCCACTTCGACCGTTCCCTCGAGAGCGGTCCCTACACTCTCAAGTACCGCGGCAGCATGTGGGGCTATAAGCGATTTTTCAAACGAGCTCAGCTTGAGGCATCAACGTTCCTTAAGGATGACTGCTTGAAGATAAACTGCACAGTTGGTGTTGTGGTGTCATCCATAGACTGCTCAAAGTTAAACACAATACAAGTTCCTGAATCTGATATTGGGGCACATTTTGGCATGCTGTTAGAAAATGAGGAAGGCTCTGATGTTACTTTTTCTGTTAATGGAGAAAAGTTTCATGCACATAAGCTTGTATTGGCTGCTCGGTCAACTGCATTTGAAACGGAGTTTTTCAATGGGATGGAGGAAGATGATAATGAGATAGTTGTAACTGACATGGAGCCTAAGGTTTTCAAGGCATTGCTTCATTTTATTTATAGAGACACTCTTATAGAAGATGAAGAGCTCTTTATTTCACGGTCAACATTCTTTGCTTCAATATCTGACTCATTTGCAGCAAAATTGTTGGCTGCTGCTGAAAAGTATGATTTGCCGAGACTGAAGCTGATGTGTGAGTCCGTAATCTGCAAAGACATATCTATAGATTCTGTGGCCTATATCTTGGCCCTTGCTGATCGATATCATGCAACAGAACTGAAGTCCATTTGCCTCCAGTTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGAGGGTTTTGAGTACCTTAAGGAGCATTGTCCTTTGCTACAATCAGAACTACTAAAGACAGTGGCAGGATGTGAGGAGGAATATAGTGGAGAAGGAAAATGTCGAAGTGTGTGGGCCCAGTTTTCTGATGGTGGTGACACCAACGATAGGAGTGTAAGGCAACAAACATGGGAAAATGGAGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCCGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAGCTTGA 1284 0.4572 MYNSSNNSNSNILASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASDGTDVRXXXXQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVNGEKFHAHKLVLAARSTAFETEFFNGMEEDDNEIVVTDMEPKVFKALLHFIYRDTLIEDEELFISRSTFFASISDSFAAKLLAAAEKYDLPRLKLMCESVICKDISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSEGFEYLKEHCPLLQSELLKTVAGCEEEYSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQEA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272314g00004 427 CDD BTB_POZ_BPM_plant 178 300 - -
Stsc272314g00004 427 ProSiteProfiles MATH/TRAF domain profile. 27 156 IPR002083 GO:0005515
Stsc272314g00004 427 CDD BACK_AtBPM-like 300 361 IPR034090 -
Stsc272314g00004 427 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 26 160 IPR008974 GO:0005515
Stsc272314g00004 427 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 359 IPR045005 GO:0016567
Stsc272314g00004 427 FunFam BTB-POZ and math domain 1 168 297 - -
Stsc272314g00004 427 SMART BTB_4 192 303 IPR000210 GO:0005515
Stsc272314g00004 427 Gene3D Potassium Channel Kv1.1; Chain A 168 297 IPR011333 -
Stsc272314g00004 427 ProSiteProfiles BTB domain profile. 192 258 IPR000210 GO:0005515
Stsc272314g00004 427 Gene3D - 302 376 - -
Stsc272314g00004 427 Pfam BTB/POZ domain 184 301 IPR000210 GO:0005515
Stsc272314g00004 427 CDD MATH 28 156 IPR002083 GO:0005515
Stsc272314g00004 427 SUPERFAMILY TRAF domain-like 24 158 - -
Stsc272314g00004 427 SUPERFAMILY POZ domain 171 301 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272314g00004 Stsc-Chr272314 27227 31563 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc272314g00004 BTB 2.7e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272314g00004 K10523 - gmx:100809683 789.645