Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272313g00005 ATGGTGGGGAGAAAGCCTTGTTGCTCATCAAAAGGTCAAGACTTGAACAGAGGTGCTTGGGTTGCTGAAGAAGACAATATCCTTATGGACTACATTAGGGTTCATGGCCACGGAAAATGGAGCACCCTTCCCCAAAAAGCAGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGGCCAGGTATCAAGAGAGGCAATATGTCTGAAGATGAAAAAGACCTCATCATTAGGCTTCACAACCTCCTTGGAAATAGGTGGTCTCTTATAGCAGGGAGGCTCCCAGGGAGAACAGATAATGAGATAAAAAACTATTGGAATAGCATCTTGAGTAAAAAGGTAAATAAGGATGATCACAACATAAAAAGAAGCACCATTTCATCAGCAGAACCATCATCACCAGTAGTTGCTGCTCCTAATAATAAGACTACTGCTGCCGATTACTCTCATGTAATCCATAGAAAGGCTACAAAGATCTCTAAGCCATTATTCATCAACAATAATCCACCATTCACTCTCCCATCCTCGGAGGCCAATAATGATGCAAATGCAGAAGAATCAAGGGCCTTTTTTGTGGATAATGTTGCTTCTGAAGCCAACATTAATAATAATAATGATGATTCAATAAGTAACAAGACCATGCAACCTACTATCACCAGCAGTAGTGGGTCGTTTCTTATGCCATTCTTCAATGAAGATGATGATGACAAATTATTCTCACCATCTTTTCTTTTAGACTATGATTTTGGGAATGTTTGCTTGAATGATCTTCTCAACTAA 795 0.3925 MVGRKPCCSSKGQDLNRGAWVAEEDNILMDYIRVHGHGKWSTLPQKAGLKRCGKSCRLRWMNYLRPGIKRGNMSEDEKDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNSILSKKVNKDDHNIKRSTISSAEPSSPVVAAPNNKTTAADYSHVIHRKATKISKPLFINNNPPFTLPSSEANNDANAEESRAFFVDNVASEANINNNNDDSISNKTMQPTITSSSGSFLMPFFNEDDDDKLFSPSFLLDYDFGNVCLNDLLN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272313g00005 264 Gene3D - 73 138 - -
Stsc272313g00005 264 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc272313g00005 264 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Stsc272313g00005 264 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc272313g00005 264 CDD SANT 72 115 IPR001005 -
Stsc272313g00005 264 Gene3D - 17 69 - -
Stsc272313g00005 264 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Stsc272313g00005 264 CDD SANT 19 64 IPR001005 -
Stsc272313g00005 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Stsc272313g00005 264 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Stsc272313g00005 264 FunFam MYB-related transcription factor 16 69 - -
Stsc272313g00005 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc272313g00005 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 203 - -
Stsc272313g00005 264 SMART sant 16 66 IPR001005 -
Stsc272313g00005 264 SMART sant 69 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272313g00005 Stsc-Chr272313 29474 32288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272313g00005 2 163 MYB Transcription Factor Family AT4G09460 53.049 1.19e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272313g00005 Myb_DNA-binding 9.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272313g00005 K09422 - gmx:100781908 240.736