Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272304g00011 ATGAAGGTCATCGCCGCCTATCTCCTCGCCGTTCTCGGCGGTAACACTTGCCCTTCCGCCGCTGACATCAAGGATATCCTCGGCTCCGTTGGAGCTGAAGTTGATGATGATGGAATAACGCTCCTTTTGTCTGAAGTTGAAGGCAAAGACATAACAGAGCTCATTGCCGCCGGTAGGGAAAAGCTTGCATCGGTGCCTTCCGGTGGCGGCGGTGCTGTTGCCGTTGCCGCTGCTCCTAGCGGAGGTGGCGCTGCTGCTCCCGCAGCCGAGTCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAGGAATCAGATGATGATATGGGATTCAGTCTCTTTGACTAA 342 0.5439 MKVIAAYLLAVLGGNTCPSAADIKDILGSVGAEVDDDGITLLLSEVEGKDITELIAAGREKLASVPSGGGGAVAVAAAPSGGGAAAPAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272304g00011 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Stsc272304g00011 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc272304g00011 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc272304g00011 113 MobiDBLite consensus disorder prediction 76 113 - -
Stsc272304g00011 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Stsc272304g00011 113 Gene3D - 1 59 IPR038716 -
Stsc272304g00011 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272304g00011 Stsc-Chr272304 38615 39576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272304g00011 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 73.451 6.43e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272304g00011 K02943 - tcc:18598192 133.265