Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272304g00008 ATGGGGTCTAAAAGCTTACTTCCAAATGATTTCCAATCAGATCCTGTCAGGAAGTCTATTTTAGATTGGAACAAATGCATAGCCATTATTGAAGGGGTTACTCAAGGACTTCTTTATCTACAAGAATATTCAAGGTTTACAATAATTCATAGAGATATAAAAGCAAGTAACATTTTGTTAGATAGCGAAATGAAGCCAAAAATTTCAGACTTCGGTATGGCAAGACAAACTTGTTGGAACATTGCTTATGAAATGTGGAAAGAAGGAAGATGCATGGAGTTTGCGGATCCTACACTTGAAGACGCAGGTACACCATGTAAAGTCTTGAGGTGCATGCATATAGCTCTATTATGTGTGCAGGAAGATGCAAATGATAGGCCATCAATGTTGGAAATTCCTTCTATGTTACGAAACGAAGACACACTTTCAGTTCCACACAAACCTGCATTTTCAAGAGGAAGAGATGTCACTGAGCCAGAGCCCGAACCAAATGAATTTATTCGGAAGCAAGAACGTGAATGTTCATTAAATGAAGTAACAATATCTGAAGTTGTTGCGAGATAA 564 0.3759 MGSKSLLPNDFQSDPVRKSILDWNKCIAIIEGVTQGLLYLQEYSRFTIIHRDIKASNILLDSEMKPKISDFGMARQTCWNIAYEMWKEGRCMEFADPTLEDAGTPCKVLRCMHIALLCVQEDANDRPSMLEIPSMLRNEDTLSVPHKPAFSRGRDVTEPEPEPNEFIRKQERECSLNEVTISEVVAR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272304g00008 187 Gene3D Transferase(Phosphotransferase) domain 1 81 146 - -
Stsc272304g00008 187 MobiDBLite consensus disorder prediction 151 168 - -
Stsc272304g00008 187 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 75 - -
Stsc272304g00008 187 Gene3D Transferase(Phosphotransferase) domain 1 9 80 - -
Stsc272304g00008 187 Pfam Protein kinase domain 17 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272304g00008 187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Stsc272304g00008 187 MobiDBLite consensus disorder prediction 144 168 - -
Stsc272304g00008 187 FunFam Os07g0541700 protein 3 85 - -
Stsc272304g00008 187 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272304g00008 187 SUPERFAMILY Protein kinase-like (PK-like) 17 138 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272304g00008 Stsc-Chr272304 32019 33013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272304g00008 11 187 Receptor kinase-like Gene Family AT4G11530 31.557 1.33e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc272304g00008 Pkinase 2.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272304g00008 - - dzi:111284454 181.415