Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272304g00007 ATGCAACCTGCGAAAGGAGATAACACCGATGAGATGAAGATAGGAATTTTGAACACAGCAATTGCAGTTGTGGTCCTTTTACAAGGCTTTCAAACATGGCAACAGGCACAATGTTGGGTACAAGTTGGTTATTGGTATTACAATTCTGGATTTCCCATTTCTCACATAAACGTTGCACTCTACACTCACCTTGTTTATGCTTTCGCCGACGTAAACTCTTCCACCAGCGAGCTCTCTGTCTCTGCTGATGACCACCGATCCTTCTCTCATTTCACAGCCACCGTGAAGAACAACAACCCCTCTCTTTCTACTCTTCTTTCCATTGGAGGCAGCCGAGCTAACATCTCGCTTGAGGTCTTATCATCCATGATAAGAAAACCTTCTTCAAGGAACTCCTTCATTCAATCTTCAATAAGAATCGCCAGGCTTTACGGCTTTCAAGGTCTCGATCTCGCATGGCTTCCTATCAATTCAAGCGTTCACATGTACTATATTGGAATGCTCTTTCAAGAGTGGAGAGCAGCTGCAAAGTCTGAGGCAACAAACTCTACCAATCCAGAGCTCATCATAACTGCATTTGTTGAATATAAACCGGGTTACAGCTTTTCGTATTACCCGGTCGAATCTATTCAAGACAACTTGAATTGGGTCCTTGTTTCGGCTTTTAGCTACCACACACCTCAGAGGGAACCGAATTTTACAGCAGCGCCTGCAGCCTTGTATGATCCTTCAAGTCAACTCAACACAGATAGTGCTATCAAGCAATGGCTAGATTCCGGAATAGCTTCTACCAAGTTGGTTTTGATGTTACCTTTCTTTGGATTTGCTTGGAAACTAAGAAATCCAAGAGACAGTGCAATAGGTGCAGCAGCAGCTGGTCCTGCAACTAATGATAGTACAGGGTTCATGACCTATAAGGGCATCAAGGATTACATTCAAGGACACGGAGGAACTACTATAACGTATAATGCTACCTATGTGGTGAACTATTGCTCTATTGGATCAACTTGGATAGGTTTTGACGATGTTGATGCCGTCAAAACCAAGGTGTCTTATGCCAGGGAAAAGAACTTACTTGGTTATGCTGTGTGGGAACTCTCCTACGATCACAATTGGGTGCTTTCTACTGCAGCAGCCCAACAGGCTCTAAGTGGCCACGATGGCTGGCGCTATAGTGGGCGATCGGTGATCATTTTGATAGCAACTGTCTGGTGTTCTCTTCTATTGGGAGTTATGATTTACTACTTCTGGAAGAGGATCTTTGAATCAAAGGGTCTGAAAAAGGCAGCTAAAGATGCAGGGGATTTTCAAGGCAGTGTAAGTGTTCCTGATATCCGAGTCTTCAGCCTTTCGGAAATTAAGTTGGCCACTAAGAGATTTTCAATTGAAAATAAGCTTGGTCAGGGTGGCTATGGTCCTGTTTATAAGGGAGTTCTACGAGATGGTAAGGAAGTAGCACTAAAAATGTTAGCAAAAACTTCTACACAAGGTTTTGAAGAGTTCAAAAATGAGATAACACTTACTGCAAGACTGCAACACGTGAATCTTGTTCGCTTATTGGGTTTCTACATTGATAAGGATGAACATATGTTGATCTACGAGTTCATGCCGAATAAAAGTTTGGACTACTATCTATTTGGTCAGATTCTTTCACAGCTCAAAATGTTTCATGATTGA 1677 0.4252 MQPAKGDNTDEMKIGILNTAIAVVVLLQGFQTWQQAQCWVQVGYWYYNSGFPISHINVALYTHLVYAFADVNSSTSELSVSADDHRSFSHFTATVKNNNPSLSTLLSIGGSRANISLEVLSSMIRKPSSRNSFIQSSIRIARLYGFQGLDLAWLPINSSVHMYYIGMLFQEWRAAAKSEATNSTNPELIITAFVEYKPGYSFSYYPVESIQDNLNWVLVSAFSYHTPQREPNFTAAPAALYDPSSQLNTDSAIKQWLDSGIASTKLVLMLPFFGFAWKLRNPRDSAIGAAAAGPATNDSTGFMTYKGIKDYIQGHGGTTITYNATYVVNYCSIGSTWIGFDDVDAVKTKVSYAREKNLLGYAVWELSYDHNWVLSTAAAQQALSGHDGWRYSGRSVIILIATVWCSLLLGVMIYYFWKRIFESKGLKKAAKDAGDFQGSVSVPDIRVFSLSEIKLATKRFSIENKLGQGGYGPVYKGVLRDGKEVALKMLAKTSTQGFEEFKNEITLTARLQHVNLVRLLGFYIDKDEHMLIYEFMPNKSLDYYLFGQILSQLKMFHD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272304g00007 558 PANTHER CHITINASE 39 380 - -
Stsc272304g00007 558 SMART 2g34 39 369 IPR011583 GO:0008061
Stsc272304g00007 558 Pfam Glycosyl hydrolases family 18 42 369 IPR001223 GO:0005975
Stsc272304g00007 558 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 436 535 - -
Stsc272304g00007 558 FunFam Class V chitinase CHIT5b 272 340 - -
Stsc272304g00007 558 ProSiteProfiles Protein kinase domain profile. 460 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272304g00007 558 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 39 385 IPR001223 GO:0005975
Stsc272304g00007 558 SUPERFAMILY (Trans)glycosidases 41 372 IPR017853 -
Stsc272304g00007 558 SUPERFAMILY Protein kinase-like (PK-like) 440 549 IPR011009 -
Stsc272304g00007 558 Pfam Protein kinase domain 461 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272304g00007 558 Gene3D Phosphorylase Kinase; domain 1 423 535 - -
Stsc272304g00007 558 Gene3D - 272 340 IPR029070 -
Stsc272304g00007 558 SUPERFAMILY Chitinase insertion domain 273 340 IPR029070 -
Stsc272304g00007 558 Gene3D Glycosidases 56 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272304g00007 Stsc-Chr272304 29819 31825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272304g00007 21 380 Glycoside Hydrolase AT4G19810 41.322 1.82e-85 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc272304g00007 Glyco_hydro_18 3.1e-58 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272304g00007 - - gmx:100787480 599.742