Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272303g00001 ATGGTGGTGGTGATAGAGCAGCAAGAGACTGAGGATCGAAACGCAAATCTTTCCAACGCCGCTTCTGTTAACGACGCTTCCGACGGCTTTGAAACAGCCAGCGACACCGACCTTCGCAGCGACACCGAAGGCGATGACGGCGGTGTGGGTAGCAGCCGTGAAGAAGAGGATCATCCTGATCAACAGCACGAGCAACCGCAACAGCAACATCAACAGCAGCAGCTGAAGACAGAGCAGCCGGAGCCGGAGCAGAGTGTTTCTCCAAGTAATGGTTCCTCCGGTGATCCCTTGATCAATAAGGAATTGGAGCAGAAATTATTGGTTCAAGCAAATCAAGCAAAGACAGAAGGGAACAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACATGCTCTACAAGTTGCACCTGACAGGCCTTCATTGGTTGAAATACGCTCAATATGCCATGCGAACCGTGCTGCATGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCAATAGAACTGAATCCGGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTCGAAGAGGCCATTGCTGATATGAAAAAGATATTAGAAAATGATCCCTCAAATGATCAAGCTAGGAAGGCCATTCGACGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAAAGATGAAGGAAGAGATGATGGCAAAACTAAAAGAAATGGGAAATTCTGTCTTGGGCCGTTTTGGGATGAGTGTTGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCCATCTCATTCCAGCGTTAA 849 0.457 MVVVIEQQETEDRNANLSNAASVNDASDGFETASDTDLRSDTEGDDGGVGSSREEEDHPDQQHEQPQQQHQQQQLKTEQPEPEQSVSPSNGSSGDPLINKELEQKLLVQANQAKTEGNKLFVDGKYEEALSQYEHALQVAPDRPSLVEIRSICHANRAACFQKLGKYDNTVKECTKAIELNPVYIKALVRRGEAHEKLEHFEEAIADMKKILENDPSNDQARKAIRRLEPLAAEKREKMKEEMMAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272303g00001 282 ProSiteProfiles TPR repeat profile. 185 218 IPR019734 GO:0005515
Stsc272303g00001 282 MobiDBLite consensus disorder prediction 65 97 - -
Stsc272303g00001 282 MobiDBLite consensus disorder prediction 1 97 - -
Stsc272303g00001 282 Pfam Tetratricopeptide repeat 186 218 IPR013105 -
Stsc272303g00001 282 Pfam Tetratricopeptide repeat 155 182 IPR019734 GO:0005515
Stsc272303g00001 282 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Stsc272303g00001 282 SMART tpr_5 110 143 IPR019734 GO:0005515
Stsc272303g00001 282 SMART tpr_5 185 218 IPR019734 GO:0005515
Stsc272303g00001 282 SMART tpr_5 151 184 IPR019734 GO:0005515
Stsc272303g00001 282 SUPERFAMILY TPR-like 110 229 IPR011990 GO:0005515
Stsc272303g00001 282 MobiDBLite consensus disorder prediction 9 31 - -
Stsc272303g00001 282 Gene3D Tetratricopeptide repeat domain 53 250 IPR011990 GO:0005515
Stsc272303g00001 282 MobiDBLite consensus disorder prediction 32 64 - -
Stsc272303g00001 282 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 52 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272303g00001 Stsc-Chr272303 7350 11799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272303g00001 110 252 Calmodulin-binding Proteins AT3G25230 36.424 2.34e-16 77.0