Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272301g00003 ATGACCGCCACCGACGCCAATTCCGCCGCGGCGGCGGCTGCGCCGTCTCAGTCATCACGACCAACCATAACCCTCCCTCCTCGCCCATCAGCGGAGGCCTTCTTCTCTGGCGCCGGCGCTGGAATCAGCCCAGGCCCCATGACCCTGGTTTCCAGCTTCTTCTCCGATGGCGGCGGCTCTGACTCCGACTACCGCTCCTTCTCTCAGCTTCTCGCCGGTGCCATGGCGTCCCCGCTTGCCTTTGGCGGCGCCGCCAGGCCCCCCTTCCCGCCTCCCGAAAATCCCGGCGAGAATTCTGCGGAGGAAGGTGCGCAGAAGAGCTTAGGGTTCAAGCAGAGTAGGCCCATGAACTTGGTGGTTGCTCGTTCTCCAATGTTCACTATTCCTCCTGGGTTGAGTCCTTCTGGGTTTCTCAATTCGCCGGGGTTCTTCTCTCCTCAGAGTCCCTTCGGGATGTCCCACCAACAAGCTTTAGCACAGGTTACTGCTCAAGCTGTCTTTGCTCAATCTCAAATGCATATGCAAGCTGAGTATCAGGCGCCTGCAGTAACAGCTCCCGCCAATTCATCAGTAGAGCAGCCATCTTTTACTCAAAATGAAGCTTCGCGGCAACAAGTGGTACCGTATGTATCAGAACCTAGCAATGCTCAAGTGGAAACATCAGATATTTCTAATGCTGATAATAAGAAATATCAACCATCTTCCATGGTCGTTGACAAACCTGCAGATGATGGTTACAACTGGCGTAAGTATGGGCAGAAGCAGGTTAAGGGTAGCGAGTTTCCACGGAGCTACTACAAGTGTACACATTTGAATTGCCCTGTTAAGAAAAAGGTTGAGCGTGCCCCCGATGGTCACATAACTGAAATTATCTATAAAGGCCAGCATAACCATGAAAAGCCTCAGGCAAATAGGCGTGTAAAAGATAATAGTGATTCAAATGGAAATTCAAATGTTCCCCCCAAGCCTGAGTTGAATTCTCAGGGTTGGGTTGGAAATGCAACTAAGATTGCAGAAAGCGTGCCTGATTGTTCAGTTCCTGAGAGTGACCAGACCTCCAATCAAGGGGCTACTAGGTTACCTGGATCAAGTGAGAGTGAGGAAGTAGGCAATGTAGATAATAGGGAAGAGGTAGATGATGGTGAGCCTAACCCTAAGAGAAGGAACACTGATGTTGCGGTTTCTGAAGTACCTCTATCGCAAAAAACCGTTACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGAAAGTATGGTCAGAAAGTAGTGAAGGGAAATCCTCATCCAAGGAGTTACTACAAATGCACTAGTGCAGGATGCAATGTGCGGAAGCATGTCGAGAGAGCATCGTCGGATCCCAAAGCCGTCATAACTACTTACGAGGGAAAACATAACCACGATGTACCTGCTGCTAGAACCAGTAGCCACAACACGGCTAATAACAATTCAGCGCCACTGAAGCCGCATAATCCGGTGCCACAGAAGCATCCTCTACTTAAAGACATGGATTTTGGAAGCAATGACCAAAGACCAGTACATCTGCGTTTAAAAGAAGAGCAAATCATAGTGTAA 1605 0.4947 MTATDANSAAAAAAPSQSSRPTITLPPRPSAEAFFSGAGAGISPGPMTLVSSFFSDGGGSDSDYRSFSQLLAGAMASPLAFGGAARPPFPPPENPGENSAEEGAQKSLGFKQSRPMNLVVARSPMFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVFAQSQMHMQAEYQAPAVTAPANSSVEQPSFTQNEASRQQVVPYVSEPSNAQVETSDISNADNKKYQPSSMVVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGNSNVPPKPELNSQGWVGNATKIAESVPDCSVPESDQTSNQGATRLPGSSESEEVGNVDNREEVDDGEPNPKRRNTDVAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASSDPKAVITTYEGKHNHDVPAARTSSHNTANNNSAPLKPHNPVPQKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272301g00003 534 ProSiteProfiles WRKY domain profile. 415 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 477 519 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 185 257 - -
Stsc272301g00003 534 SUPERFAMILY WRKY DNA-binding domain 412 480 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 82 103 - -
Stsc272301g00003 534 FunFam WRKY transcription factor 33 407 473 - -
Stsc272301g00003 534 ProSiteProfiles WRKY domain profile. 243 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 308 334 - -
Stsc272301g00003 534 SMART WRKY_cls 242 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 SMART WRKY_cls 420 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 Gene3D WRKY domain 405 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 Gene3D WRKY domain 229 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 1 38 - -
Stsc272301g00003 534 Pfam WRKY DNA -binding domain 421 477 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 Pfam WRKY DNA -binding domain 243 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 SUPERFAMILY WRKY DNA-binding domain 240 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 277 400 - -
Stsc272301g00003 534 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 139 498 IPR044810 GO:0003700
Stsc272301g00003 534 FunFam WRKY transcription factor 231 302 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 482 499 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 1 25 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 345 368 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 277 307 - -
Stsc272301g00003 534 MobiDBLite consensus disorder prediction 185 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272301g00003 Stsc-Chr272301 16397 20636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272301g00003 19 532 WRKY Transcription Factor Family AT2G03340 54.190 1.98e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272301g00003 WRKY 9.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272301g00003 - - gmx:100796679 783.867