Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272301g00002 ATGGGTTGTGTTAACTCCAAGAAATCTCGCGCCGGAGGTCCATCTGCTTCGCCGGCCGACGATGGCGTAGCCTACGTCAAATCCTATTCCCGGAGAGGCAGAGTCGGCTCGGGTCGCGTTGGTGCGGTTTCCTCTTCTTCCCCTGCTTCCAGAGGCCGTTCTTCCACCTCCGGCTTGGTTGCCGGTCAGGGTGGGGAAGGAGGCGGTGAGGCGAAAGGCGAGGAGGCGGCGGCGGAGAAGCTAGAGAAGAGGAGTAATAAGGATATGGTGTTGAGAGATAATGGTAATGGGAATAATGGTGATGGTGGGAGAGGGAGCGTGAAGGCAATTGGGGGATTGAATGTGAGGATTGGTGTTACGCATAGATTTGTGGAAGCTGAGAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGTGAAGCCATTCATGGTATGGTCCCTCTCAGAAGTGATGCTTTTGAGAAATTGGACAAGATTGGACAAGGTACATATAGCAGCGTTTTCCAAGCACGTGAAGTTCAGAGTGGAAGGATGGTTGCCCTGAAGAAGGTTCGCTTTGACAATTTCCAACCGGAGAGCATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACCTCATGAAATTGGAGGGTATAATCACTTCTCCATTGTCACACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCTGACACCAAGTTCACTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATTGAGCATTGTCACCTTAGAGGTATTATGCATCGAGACATTAAAGTTTCAAACATATTAGTGAACAATGAAGGTATTCTCAAGATTGGAGACTTTGGACTAGCAAATACACTTAGCCCAAACAACAAGAACCCTTTAACAAGTCGTGTGGTGACTCTCTGGTATCGCCCTCCCGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTTGATCTATGGAGTATCGGCTGCGTATTTGCAGAATTTTTCTTGGGGAAGCCAATCCTTAAGGGCAGAAATGAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACCATGTTTAAACCTCAGACTACCTATGAAAACTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTCTACTGTCCATTGATCCTTCCAAGCGTGGCACTGCCTCCTCTGCACTTATGTCTGAGTATTTTAGCGCAAAACCACATGCTTGCAATCCATCACTCCTTCCAAAGTATCCACCAAGCAAAGAACTGGATGCTAAATACCGGGATGATGTACAAAGGAAAAAGGCTGGAGTGCCGCGTGAGATTGCTGCTACTACATCAAAAAGGCCAAAAAGGGTCAAGAAGGTTTTGGATGGCCCCAGCTATAATAATAAATCAGCTACAAAAGAGGAATTGCATCACAATGCTCAAAATTCTGGTAGAGATGATAAAGCATACCAGACAAAGGGAAGAGTTGGAGTTATGCCAAAGGAACAGCAACATAAACCTTTATATGATGCTAGGTCGGAGGCTGCCAAAACAAATGCTTCTCATGGCTATAGTGTACACTCTGGACCGGGAATGGCAGCGGCCTCAGGGTCTACCGGCTTTACTTGGGCTGCTAAGAGGCGGAAAGATGCTGCATCAACTTTATCAGATGGCTCAAGAAGTAAGATCAGTGGACTGGATCCAAACTTCGCCAAAGGAACATATGATTTATCTAAACAAGGGATTGATGTTTCACAAAGAAATCAGAGCTACCCAAACTTTCATGATGAAACTTCCCATCATCAAAGTGAATCATTTGATGGAGCTGATGAGTACTTAGATTATGATCCCACAGAAAGAGCAGATTCTATGATAAGTACTCAGGGCAACATAAATGAAGACTTGCATTTTGAGAATGCCAGGCGAGGAGCTAGAAAATCACGGTTTGGTTAA 2028 0.4576 MGCVNSKKSRAGGPSASPADDGVAYVKSYSRRGRVGSGRVGAVSSSSPASRGRSSTSGLVAGQGGEGGGEAKGEEAAAEKLEKRSNKDMVLRDNGNGNNGDGGRGSVKAIGGLNVRIGVTHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLRSDAFEKLDKIGQGTYSSVFQAREVQSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNLMKLEGIITSPLSHSIYLVFEYMEHDLAGLVSSPDTKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTLSPNNKNPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSIGCVFAEFFLGKPILKGRNELCGSPPEEFWRKCKLPLATMFKPQTTYENSLWERCKGFPPTAVSLIETLLSIDPSKRGTASSALMSEYFSAKPHACNPSLLPKYPPSKELDAKYRDDVQRKKAGVPREIAATTSKRPKRVKKVLDGPSYNNKSATKEELHHNAQNSGRDDKAYQTKGRVGVMPKEQQHKPLYDARSEAAKTNASHGYSVHSGPGMAAASGSTGFTWAAKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLSKQGIDVSQRNQSYPNFHDETSHHQSESFDGADEYLDYDPTERADSMISTQGNINEDLHFENARRGARKSRFG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272301g00002 675 Gene3D Phosphorylase Kinase; domain 1 146 238 - -
Stsc272301g00002 675 PANTHER CELL DIVISION PROTEIN KINASE 154 435 - -
Stsc272301g00002 675 ProSiteProfiles Protein kinase domain profile. 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 475 514 - -
Stsc272301g00002 675 CDD STKc_CDK9_like 156 431 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 613 675 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 660 675 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 496 514 - -
Stsc272301g00002 675 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Stsc272301g00002 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Stsc272301g00002 675 Pfam Protein kinase domain 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272301g00002 675 FunFam probable serine/threonine-protein kinase At1g54610 143 238 - -
Stsc272301g00002 675 SUPERFAMILY Protein kinase-like (PK-like) 150 434 IPR011009 -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 72 90 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 1 105 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 622 643 - -
Stsc272301g00002 675 Gene3D Transferase(Phosphotransferase) domain 1 239 469 - -
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 40 61 - -
Stsc272301g00002 675 SMART serkin_6 156 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272301g00002 675 MobiDBLite consensus disorder prediction 538 562 - -
Stsc272301g00002 675 FunFam Mitogen-activated protein kinase 237 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272301g00002 Stsc-Chr272301 8287 12237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272301g00002 154 463 Core Cell Cycle Gene Families AT5G10270 45.509 6.83e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc272301g00002 Pkinase 2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272301g00002 - - lja:Lj1g3v2982400.1 781.171