Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272295g00003 ATGGAACCTTTTTCTACTTCCTCCTCTTCTTCTTACCAACAATACCATAATCATCTTCTTGACTCATCATCATTCTTCATCCCCAATAACACTACACCTCCTCCAATAAAGCTTTCTCCTTCTTCTCTTCTTCATCCTCATCAGCATCATATGATCAACACTACTACTGCCCATTATTATCCTCCTCTTATTAACCAGCAGGAAACATCTTCTTTGGATACTAGCTCTCTTGATCAAACCTACTCCAAGGTTGCTGCTACCACCATCCCTTACAACAGCACTAGTCCTGATCCTTCTCCTCCTTTTCTCACACAAATAAACCACAGCCCTGAATCCTCCTCTGTGGTTGAAAACGGTGAGCAAGTCACTCAGAACATGGACAACAAGAGGAAAATTACTTCTAAAGCCTCTTCCTTCAACAATAATAAGGAGGTCTCAGCAGGAGGTAGAGAAGGGAGAAGTAGCAAGAAACAAAAGAAGGGTAATAATGGTGGGAGTGGGGTGATGAAAAAAGGAGAGAAGGAAAAAGAAGAGGCTCCAACAGCAACTGGGTATATCCACGTTAGAGCAAGAAGGGGCCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAGATAAGTGAGAGGATGAAGATGTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAGATCATCAATTATGTTCAGTCCCTACAGAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCACTCAGCCCCTTCTTCTTTGACTTTGCAATGGACATAGATAGTAATGCCCACTTGGTTAGGCCACTCGATCAGAATGTTCAGAATCAGAAGATAACAAACATAGCATCATCAGCACCAACACTGGCATCAATACCACAATGCAGCAAAAACCAGGCTACACCCTTTGCTGATACAACCACCATGACCACCACCACCACTACCACCACCTTCCCCGGTGCTAATAATAATAATAACAGTGACTATCTCATGGATTATTCATCATCACCAGTTTTTGAACAAGGACAGAGGACATCAAATGTCTTCTCTGAGTATACCGGTGGTCAATTCTGGGAAGTAGAAGAAGACCAAAGACAAAAGCTTCTTCTTCATTCATATGGACTTGGCAGCAACAACTTAGGAGGTGCATGGAGGGACCAGGTCGGAATCAGAGACATTGTTGGGGTTGGGCATGGTGGCCAAAGGGATATGGAGGGCTTCCGTTTTCTGTCATTAACTGGATTATTGCTTACGTATAGCCCAATCCACCGACCTCAGAGACAAAAAAAATCAGTGCCATTCTCTGTTACTCTCTATCTCTCTGATACCTCCACCGATTCTATCCCTCTAACTCCCTCATCCCTCTGTCAGTCACCGTCGCCGCGGCCTCTCTTGCTCACTCTGTCTCCGCCACCCCTCAGTCGGTCGGTACCTAATCTCCAGTTCCATCCCGCCGCATCGGAACTCCTCCGTCTCACCATCGCTTCGTCGCGTGTTCTGCTCTACTCCCTCGCTCGCCGTCCATCTGCAGATTCACTTCGAAAGTCAGCTGAATTCAATGAAGGTTCTGCAATTGGCCTTGATGCTCGCTCTGATCTGTGGATTTGCAGCCATTTCCGCCTACATCAATGGAATCTCTCAATTCTCTGTATGTATGTATGTATATCTCGCAGGTATCAGCTTACAGATGAAGACACGGAAGCATTGCTTTCCCTGCATGACACTTTCGAGAAGTGTGTGAGTGCAAATGGACTTGGGTTGAAAGCAGCCAAGGGCAGTGATTATTGCCAAACCACTATAAACTTTCCCAGTGACACTATCCCCAAATGGAAAGATCCCAAGACTGGTGAACTTGAATCTCTATCATTTGATTTTAATCTCTGTGAAGCTGTGGCTACCTGGGAACAGGTTCGGAACAGTACTACTATACTGACTAAGGAATTTATTGATTCTTTACCAAATGGATGGGAAGAATACGCGTGGCGTAGGATCAATAAGGGAATACTTCTCAACCGCTGCCAGAACAAAACCTTGTGCATGGAGAAACTTTCACTTGAGATAGATGATTATGATGTTGTCATTAGAGAAAATGGTGCTCCAATAGAGAATTACACTGAGTATGTGGGTAGGAAAAGCACATTTCGCCTTCTGAACAGAGGATCTGCCAAAGCGCTGGATAAAGTTGTTGAATTAGATGAACAACGGAAAGAGGCTTTGATAATAAAAACAACTATTCATGACATCATGAATCAAATGATTCGGGAACTTCCCATAAAAAATCCTGTATATCTCATGCTAGGTGCATCCTTTGGTTCAGCAGCAAAAGGAACTGGGCTTAAGGCTCTTGAGTTTGCACTCTCTATGTGTGATTCAGTGGATATGTATGGTTTCACTGTGGATCCTGGTTATAAAGAATGGACAAGATATTTCTCTGAATCTCGTCAAGGTCATACCCCATTGCATGGTAGAGCTTACTACCAGATGATGGAGTGCTTGGGACTTATCAAAATCCATTCTCCCATGAGAGCTGATCCAAACCGTGTTGTAAAATGGGTTCCGAGCTACCACATGATAAGGGATGTCAGGATTGCCTCAGAGAAGTTATTGGGGAGAGTTGGAGCAGGATCTGTAAATCCATTGAGTGCATGTTCCATTATTAAGAGGCAAGTTAAAAGAAATCCAGATACAATTTCAAAGCTCAGAAAGGCTGCACAGGATCATATGAGGTATGTGAAGAGCTCAACCATGTATCCTCTAGAGCATAATCCTGGACATGGCTTACTATGCACTGTGCCTGCTGCTAAGTGA 2835 0.442 MEPFSTSSSSSYQQYHNHLLDSSSFFIPNNTTPPPIKLSPSSLLHPHQHHMINTTTAHYYPPLINQQETSSLDTSSLDQTYSKVAATTIPYNSTSPDPSPPFLTQINHSPESSSVVENGEQVTQNMDNKRKITSKASSFNNNKEVSAGGREGRSSKKQKKGNNGGSGVMKKGEKEKEEAPTATGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASLSPFFFDFAMDIDSNAHLVRPLDQNVQNQKITNIASSAPTLASIPQCSKNQATPFADTTTMTTTTTTTTFPGANNNNNSDYLMDYSSSPVFEQGQRTSNVFSEYTGGQFWEVEEDQRQKLLLHSYGLGSNNLGGAWRDQVGIRDIVGVGHGGQRDMEGFRFLSLTGLLLTYSPIHRPQRQKKSVPFSVTLYLSDTSTDSIPLTPSSLCQSPSPRPLLLTLSPPPLSRSVPNLQFHPAASELLRLTIASSRVLLYSLARRPSADSLRKSAEFNEGSAIGLDARSDLWICSHFRLHQWNLSILCMYVCISRRYQLTDEDTEALLSLHDTFEKCVSANGLGLKAAKGSDYCQTTINFPSDTIPKWKDPKTGELESLSFDFNLCEAVATWEQVRNSTTILTKEFIDSLPNGWEEYAWRRINKGILLNRCQNKTLCMEKLSLEIDDYDVVIRENGAPIENYTEYVGRKSTFRLLNRGSAKALDKVVELDEQRKEALIIKTTIHDIMNQMIRELPIKNPVYLMLGASFGSAAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRQGHTPLHGRAYYQMMECLGLIKIHSPMRADPNRVVKWVPSYHMIRDVRIASEKLLGRVGAGSVNPLSACSIIKRQVKRNPDTISKLRKAAQDHMRYVKSSTMYPLEHNPGHGLLCTVPAAK 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272295g00003 944 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Stsc272295g00003 944 SMART finulus 200 250 IPR011598 GO:0046983
Stsc272295g00003 944 Pfam Glycosyltransferase family 29 (sialyltransferase) 694 824 IPR001675 GO:0006486|GO:0008373
Stsc272295g00003 944 MobiDBLite consensus disorder prediction 89 184 - -
Stsc272295g00003 944 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 260 IPR036638 GO:0046983
Stsc272295g00003 944 CDD bHLH_AtBPE_like 184 269 - -
Stsc272295g00003 944 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Stsc272295g00003 944 Gene3D Glycosyl transferase family 29 685 848 IPR038578 -
Stsc272295g00003 944 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Stsc272295g00003 944 Gene3D - 191 260 IPR036638 GO:0046983
Stsc272295g00003 944 MobiDBLite consensus disorder prediction 89 148 - -
Stsc272295g00003 944 PANTHER SIALYLTRANSFERASE-LIKE PROTEIN 2 695 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272295g00003 Stsc-Chr272295 19025 36015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272295g00003 576 942 Glycosyltransferase AT3G48820 72.932 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272295g00003 Glyco_transf_29 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272295g00003 - - gmx:732652 682.174