Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272293g00008 ATGGGAAGGGCACCGTGTTGTGAGAAGATGGGGTTAAAGAAAGGTCCATGGGCACCTGAAGAGGGTGAGATTCTTGTCAATTATATCAACAAAAATGGTGGCCACGGAAGTTGGCGTGCTCTTCCAAAGTTGGCAGGTCTTTTACGATGTGGTAAGAGTTGTCGGCTTAGGTGGATGAATATTAGGCGTGGTCCTTTTACAGTTGAGGAAGAAAAGTTAGTTATGCAGCTTCATGGTGTCCTTGGAAATAGGTGGGCCGCTATCGCATCTCAGGTAGAGGGTAGAACAGACAATGAGATCAAGAATCTGTGGAACACTCACTTGAAGAAGAGGAACCGGAAGAGGCTTCACTATACACACATGGCTGAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCTAGACTTTCTAAGGATCAACATTCCTTCACCTTCACCAACAACCCAACTCATCATTCTGACTATTTCCTAAGGATTTGGAACTCTCAAGTTGGTGAATCATTTAGAACTTTCACTACTACTAATCATTCAAAAGTTCTGCAAGATGATCTGGATTGGAGCAACCCTAATTCAATAATCTCTAATAATGATGACTTGGAGGACTCATCTGACACTGCATTGCAGCTCTTACTAGATTTTCCTATACACAATGACATGAGCTTCTTAGAAGGTAACTCTTTTGGTTGGGCTATTTTGTAG 696 0.4282 MGRAPCCEKMGLKKGPWAPEEGEILVNYINKNGGHGSWRALPKLAGLLRCGKSCRLRWMNIRRGPFTVEEEKLVMQLHGVLGNRWAAIASQVEGRTDNEIKNLWNTHLKKRNRKRLHYTHMAEWESARLEAEARLSKDQHSFTFTNNPTHHSDYFLRIWNSQVGESFRTFTTTNHSKVLQDDLDWSNPNSIISNNDDLEDSSDTALQLLLDFPIHNDMSFLEGNSFGWAIL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272293g00008 231 CDD SANT 65 108 IPR001005 -
Stsc272293g00008 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 59 IPR017930 -
Stsc272293g00008 231 CDD SANT 16 61 IPR001005 -
Stsc272293g00008 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 169 - -
Stsc272293g00008 231 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc272293g00008 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc272293g00008 231 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Stsc272293g00008 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 112 IPR017930 -
Stsc272293g00008 231 FunFam MYB-related transcription factor 13 64 - -
Stsc272293g00008 231 Gene3D - 11 63 - -
Stsc272293g00008 231 ProSiteProfiles Myb-like domain profile. 63 108 IPR001005 -
Stsc272293g00008 231 Gene3D - 65 111 - -
Stsc272293g00008 231 SMART sant 62 110 IPR001005 -
Stsc272293g00008 231 SMART sant 13 61 IPR001005 -
Stsc272293g00008 231 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272293g00008 Stsc-Chr272293 25482 26599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272293g00008 1 224 MYB Transcription Factor Family AT3G61250 51.957 3.39e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272293g00008 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272293g00008 K09422 - gmx:100816569 293.508