Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272293g00002 | ATGTCATTCACGGGGACTCTTGATAAATGCGCTGCTTGTGATAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGCGTACCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAGGGAACTCTCACGATGAGCACATACTCCTCAATGGATGGAGTCCTCTATTGCAGGCCACATTTTGAACAGCTTTTCAAGGAATCTGGCAACTTCAGCAAGAACTTCCAGAATGCAAAGTCTTCTGAGAAAAATGACCTGAACAGGACCCCAAGTAGACTCTCTTCCATGTTCAGTGGAACCTTGGACAAATGTTCTGTTTGCTCAAAAACAGTGTATCCACTGGAGAAGGTGACACTGGAGGGAGAATGCTTTCACAAGAGTTGCTTTAGGTGTACTCATGCAGGGTGCCCTCTCACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTCTATTGTAGGCACCACTTTGCACAACTCTTCATGGAGAAAGGCAACTACAGCCATGTCCTCCAAGCTGCTGCCCACAAGAGGACTAATTCCTCTGAACCTCCTGAGATTCCTGACGACACTGCGCAGCAGCCGGACCCCGAGCCCGAGCCCGAGCCTGAAGCCGACAAGGAAGAGAACAAGCCGGAGGATGAAACCGAGGCAGCAGAGGAGAACAAAGAAAAAGAAGATGAGCCTTCCTCTTCTTGA | 699 | 0.4778 | MSFTGTLDKCAACDKTVYVVDLLTLEGVPYHKNCFKCSHCKGTLTMSTYSSMDGVLYCRPHFEQLFKESGNFSKNFQNAKSSEKNDLNRTPSRLSSMFSGTLDKCSVCSKTVYPLEKVTLEGECFHKSCFRCTHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGNYSHVLQAAAHKRTNSSEPPEIPDDTAQQPDPEPEPEPEADKEENKPEDETEAAEENKEKEDEPSSS | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272293g00002 | 232 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Stsc272293g00002 | 232 | Gene3D | Cysteine Rich Protein | 101 | 169 | - | - | |
| Stsc272293g00002 | 232 | PANTHER | OS06G0237300 PROTEIN | 6 | 84 | - | - | |
| Stsc272293g00002 | 232 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Stsc272293g00002 | 232 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Stsc272293g00002 | 232 | MobiDBLite | consensus disorder prediction | 174 | 232 | - | - | |
| Stsc272293g00002 | 232 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - | |
| Stsc272293g00002 | 232 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Stsc272293g00002 | 232 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Stsc272293g00002 | 232 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Stsc272293g00002 | 232 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Stsc272293g00002 | 232 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Stsc272293g00002 | 232 | FunFam | LIM domain and actin-binding 1 | 99 | 169 | - | - | |
| Stsc272293g00002 | 232 | MobiDBLite | consensus disorder prediction | 193 | 222 | - | - | |
| Stsc272293g00002 | 232 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Stsc272293g00002 | 232 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Stsc272293g00002 | 232 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Stsc272293g00002 | 232 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Stsc272293g00002 | 232 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 170 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272293g00002 | Stsc-Chr272293 | 8493 | 9694 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Stsc272293g00002 | LIM | 3e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc272293g00002 | - | K09377 | gmx:100800234 | 352.829 |