Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272292g00003 ATGGATGAACCCATGGAAAGTGATGAGAGGCCAGTCTTCAAAGATATCAGACGCTACTTCTGTGAATACTGTGGCATTTGCCGGTCTAAAAAAGCCTTAATTACCTCCCACATCAATTCGCAACACCAGGATGAGTTGGAAAAGGCTAGAGCTGATGGAAATAATGAAGAACAGTGTGAAATACCAAACAACACTTGCCAACAATGTGGTGCTAGTTTCAAAAAACGTGCTTACTTATTGCAGCACATGCAAAGCCATTCACTTGAGAGGCTGTATGTGTGTACGGTTGATGATTGTCAGGCAAGTTATAGAAGGAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCTAATTGAGAATTGCAACCTAAGTTTCTCAATACAAGGTAATATGACAAGGCATGTTAAGGAGATGCATGATGAGGGTTCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAACTGGATGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGAAAGCATGAAGATTCTCATGTCAAGCTGGAGTCGGTAGATGTAGTATGCTTGGAGCCTGGTTGCATGAAACATTTCTCTAATAACAAGTGCCTTAAAGAACATATTGAATCCTGCCATCAATATGTAACCTGTGACAGTTGTGGAAGTAGGCAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACACGAAGCTGATAAATCGTCAGCGGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAGCTTCTCGAGTAAATCTAATCTTGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAACCTTTTGTGTGTGGCTTTCCTGAGTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGTGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTGGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTATTTATGCAGAGTGACCAGATGAATTGA 1086 0.4079 MDEPMESDERPVFKDIRRYFCEYCGICRSKKALITSHINSQHQDELEKARADGNNEEQCEIPNNTCQQCGASFKKRAYLLQHMQSHSLERLYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCLIENCNLSFSIQGNMTRHVKEMHDEGSTSTNVESKQFVCPETGCGKVFKFASKLRKHEDSHVKLESVDVVCLEPGCMKHFSNNKCLKEHIESCHQYVTCDSCGSRQLKKNIKRHLRTHEADKSSAEFKCEFKGCSCSFSSKSNLVTHKKAVHFKEKPFVCGFPECGMRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLFMQSDQMN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272292g00003 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Stsc272292g00003 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Stsc272292g00003 361 SUPERFAMILY beta-beta-alpha zinc fingers 65 116 IPR036236 -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 158 184 - -
Stsc272292g00003 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 92 116 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 121 146 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 19 42 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 192 217 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 220 241 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 160 184 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 281 307 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 64 86 IPR013087 -
Stsc272292g00003 361 SMART c2h2final6 250 275 IPR013087 -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Stsc272292g00003 361 SUPERFAMILY beta-beta-alpha zinc fingers 154 185 IPR036236 -
Stsc272292g00003 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Stsc272292g00003 361 SUPERFAMILY beta-beta-alpha zinc fingers 231 284 IPR036236 -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 93 116 - -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Stsc272292g00003 361 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Stsc272292g00003 361 Pfam Zinc finger, C2H2 type 250 275 IPR013087 -
Stsc272292g00003 361 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Stsc272292g00003 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 117 157 - -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 6 92 - -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Stsc272292g00003 361 SUPERFAMILY beta-beta-alpha zinc fingers 102 147 IPR036236 -
Stsc272292g00003 361 FunFam Zinc finger 45-like 65 87 - -
Stsc272292g00003 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 278 304 - -
Stsc272292g00003 361 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Stsc272292g00003 361 Gene3D Classic Zinc Finger 218 277 - -
Stsc272292g00003 361 PANTHER ZINC FINGER PROTEIN 9 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272292g00003 Stsc-Chr272292 9218 12400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272292g00003 69 310 C2H2 Transcription Factor Family AT1G72050 43.051 2.87e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272292g00003 zf-C2H2 0.0061 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272292g00003 K09191 - gmx:100801812 543.502