Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272289g00001 ATGGCAGTGGAGTTAATGGGATTCCCAAAAATGGACGACCCAAACAACAAAGCCATACAAGAAGCAGCATCCGAGGGCATAAAGGGAATGGAGCACCTCGTTCGTCTTCTTTCAAACCCTTCGCAAAACGACACCACTGACCTTACAAACGTCACCGTTTCAAAGTTCCGAAAACTCATCTCCTTACTTAACCGCACCGGCCGCGCCCGCTTCCGCCGTGCACCAATTTCAAATTCCGACGACACTTTAACCCTCTCTCCGCCCACCTTAACTCCTCCTCCTCCTCCTCCGCCGCCACCGCAGTCGCAGTCAAATCCACAGCCTCTTGCGGTTTCTCCGGTCACCGTCCATCACACTACTCCTCTTCTTCCGCCGCAGACTCTCACTCTTGACTTCACCAAACCTAACAACAGCTTCCTCACCACCGTTTCCAACAACGCTGGCGTCAAATCCATGGAGCTGGAGTTCTCGAAGGACACCGCGACGTTTAGCGTCTCGTCGAACTCTTCGTTTATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGCTCGGAACCTCGATCTTCCTCAACCCTGCCGGAAAATTGCCTCTCTCGTCGTCGGCGCCGGCTCCGGTCAAGAAAAGGTGCCATGACCACCACTCCGACGATGTCTCCGGCAAGGCCTCCGGTTCTTCCAGCAAGTGCCACTGCATCAAGCGAAGGAAAAATAGGGTTAAGAAGACAATAAGAGTTCCGGCAATTAGTACGAAGATAGCCGATATTCCGGCGGATGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATCAAAGGGTCACCGTACCCAAGGGGTTATTATAAGTGCAGTACCGTGAGAGGGTGCCCAGCGAGGAAACACGTGGAGCGGGCACCAGACGATCCTTCTATGCTGATCGTAACGTACGAAGGGGAGCACCGTCACTCCATTCAGGCCGCGATGCACGATAACATTTCCTCTGCGGGAGTGGGTTTGGTATTCGGGTCAACGTAA 1020 0.5412 MAVELMGFPKMDDPNNKAIQEAASEGIKGMEHLVRLLSNPSQNDTTDLTNVTVSKFRKLISLLNRTGRARFRRAPISNSDDTLTLSPPTLTPPPPPPPPPQSQSNPQPLAVSPVTVHHTTPLLPPQTLTLDFTKPNNSFLTTVSNNAGVKSMELEFSKDTATFSVSSNSSFMSSAITGDGSVSNGKLGTSIFLNPAGKLPLSSSAPAPVKKRCHDHHSDDVSGKASGSSSKCHCIKRRKNRVKKTIRVPAISTKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPSMLIVTYEGEHRHSIQAAMHDNISSAGVGLVFGST 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272289g00001 339 FunFam WRKY transcription factor 65 243 320 - -
Stsc272289g00001 339 SMART WRKY_cls 259 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272289g00001 339 MobiDBLite consensus disorder prediction 107 122 - -
Stsc272289g00001 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 322 IPR044810 GO:0003700
Stsc272289g00001 339 SUPERFAMILY WRKY DNA-binding domain 257 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272289g00001 339 MobiDBLite consensus disorder prediction 203 232 - -
Stsc272289g00001 339 Gene3D WRKY domain 246 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272289g00001 339 MobiDBLite consensus disorder prediction 87 106 - -
Stsc272289g00001 339 MobiDBLite consensus disorder prediction 71 122 - -
Stsc272289g00001 339 Pfam Plant zinc cluster domain 210 257 IPR018872 -
Stsc272289g00001 339 Pfam WRKY DNA -binding domain 261 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272289g00001 339 ProSiteProfiles WRKY domain profile. 254 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272289g00001 Stsc-Chr272289 24105 26897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272289g00001 1 338 WRKY Transcription Factor Family AT2G24570 53.161 2.83e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272289g00001 WRKY 5.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272289g00001 - - gmx:100127394 394.43