Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272288g00008 ATGGACATGGAATTAGGCACAGGCACAGAAGATGGCTTTCTTAACGATGCTTCTAACATAGCCAAGGGAAAGCGCACCAAGAGGCAACGACCCTTGTCCCCTTGTGACGTCGCCGCCGCCGCAGCTATCACTTCCAGCTCCTCAAGCGCCTCCGCTGAACACGCCTCCTTCTCTTCTACCACCACCGCCACTTCTGAAGAAGAAGAAGAGGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAAGAGGCCAAGAAGAAACTGATGATGAAGAAGAAGATGATGAAAGCAAGATGAGAGAGAAGAGCAGAAGAATATCGGAAGTAGTGACAACAACAACTGCAAAAATGGGTTTCTACATCTACGAGTGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGGCACAGGGCCAGCCATAAAAAGCCAAAACTCACATCAGAGGATAAAAAGAAATCGCAACCAAATACTTTGGCGCTAATCACAAATTGCAACTTTCAAGAAAGCAAGCAAGCAAGTGTGACAGCAAGCCCTCCAATTTCCTTTCAATTGGGATATGGTGGTGGTGGTAACAATAACAATAACAATAATAATAACAACAAGGCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCGCTTGGTGGTCACATGAGGAGGCATAGGACACCTGTCATCGGTAATACTNNNNNNNNNNGCCAACTTGTGATGACGTGGCGGTTAAGCCGCTGCGGAATGTTCTAG 777 0.4569 MDMELGTGTEDGFLNDASNIAKGKRTKRQRPLSPCDVAAAAAITSSSSSASAEHASFSSTTTATSEEEEEDMANCLILLAQGKRGQEETDDEEEDDESKMREKSRRISEVVTTTTAKMGFYIYECKTCNRTFPSFQALGGHRASHKKPKLTSEDKKKSQPNTLALITNCNFQESKQASVTASPPISFQLGYGGGGNNNNNNNNNNKAKIHECSICGSEFTSGQALGGHMRRHRTPVIGNTXXXXQLVMTWRLSRCGMF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272288g00008 258 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Stsc272288g00008 258 MobiDBLite consensus disorder prediction 40 63 - -
Stsc272288g00008 258 PANTHER ZINC FINGER PROTEIN ZAT5 30 234 - -
Stsc272288g00008 258 MobiDBLite consensus disorder prediction 1 106 - -
Stsc272288g00008 258 Pfam C2H2-type zinc finger 210 234 - -
Stsc272288g00008 258 Pfam C2H2-type zinc finger 123 148 - -
Stsc272288g00008 258 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Stsc272288g00008 258 MobiDBLite consensus disorder prediction 139 158 - -
Stsc272288g00008 258 Gene3D Classic Zinc Finger 121 232 - -
Stsc272288g00008 258 SMART c2h2final6 210 232 IPR013087 -
Stsc272288g00008 258 SMART c2h2final6 123 145 IPR013087 -
Stsc272288g00008 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Stsc272288g00008 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 232 IPR013087 -
Stsc272288g00008 258 SUPERFAMILY beta-beta-alpha zinc fingers 122 232 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272288g00008 Stsc-Chr272288 37073 38248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272288g00008 20 237 C2H2 Transcription Factor Family AT5G04390 38.168 3.34e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272288g00008 zf-C2H2_6 2.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272288g00008 - - gmx:100785286 207.994