Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272288g00004 ATGGATGTTCACCATGAAACACTGATAATCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGTTCATCAATTTGATTAGAGGGGAGAATAATAATGAAGATGATGCCATGTTCTTAAAGTATGGTTCAGACATTATCATCAATGATTGTCTCCTTGATGATAGTCAGAATCATCAGCTACTTCTTCCATGCCCTACAACTGCAAATAACCAATTTGATGAGATTCATCAGATCAATAATAATGAAGTGATGATGAATAATGTGTATGGTGATGATCCTAATAACCCTGCAACTCTTATTAGCTCCTTCTCTTGTTTTGATGAAGGGGTGGTTAATAATAGAGAAAATGAAGAAGGAGAGTATTCCTCTGCAACCACAACTGCAACTGATGAGGCTACTCTGCTTAGTGCTACACCAAGGCTGAAAACTGATAGGTCCAAGACTCTCATCTCTGAGAGGAGGAGGAGAAGCCGAATGAAGGAGAAGCTTTATGCACTCCGCGCTTTGGTCCCTAACATAACAAAAATGGATAAGGCATCAATCATTGGAGATGCAGTATCTTACGTGCATGACCTTCAAGCACAAGCTAAGAAGCTCAAGGCTGAGGTTGCAGGACTTGAAGCATCTATCTTTGTGTCAGAAAATTACAAAGCATCATTTGATGACAACCCCATAAAAACTGTTCAAGTCACACCCAACAGCCACCCAATCAACAAGAAGATAGTGCAGATAGAGATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCATCAAAGGAGGAGGAGGAGGAGGAGTTGCTGCATCACTCTACAGGGCTCTGGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCAAACTTGGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGCTTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTGTGGGTGACAGGCGCTCTTCTCAACCAAGGCTTTGAATTCATGCCAAATTTTCATTCTTGA 1035 0.4058 MDVHHETLIINNDYEVHDFTEDPNFDQFINLIRGENNNEDDAMFLKYGSDIIINDCLLDDSQNHQLLLPCPTTANNQFDEIHQINNNEVMMNNVYGDDPNNPATLISSFSCFDEGVVNNRENEEGEYSSATTTATDEATLLSATPRLKTDRSKTLISERRRRSRMKEKLYALRALVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASIFVSENYKASFDDNPIKTVQVTPNSHPINKKIVQIEMVQVEERGYYVKIVCIKGGGGGGVAASLYRALESLVGFSVRNSNLETVCDTILLTFTLNVKAFEPEVNLPNLKLWVTGALLNQGFEFMPNFHS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272288g00004 344 Pfam Helix-loop-helix DNA-binding domain 156 199 IPR011598 GO:0046983
Stsc272288g00004 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Stsc272288g00004 344 Gene3D - 142 215 IPR036638 GO:0046983
Stsc272288g00004 344 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 334 - -
Stsc272288g00004 344 SMART finulus 155 204 IPR011598 GO:0046983
Stsc272288g00004 344 Coils Coil 195 215 - -
Stsc272288g00004 344 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 145 215 - -
Stsc272288g00004 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272288g00004 Stsc-Chr272288 14921 16348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272288g00004 12 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.949 3.45e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272288g00004 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272288g00004 K26214 - gmx:100805451 334.724