Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272281g00001 ATGAGTTTTCGTAAGGGCGCTAAGGTTTGGGTCCAGGATAGGCTTGATGCTTGGTTACCTGCCGAAGTTGTTGACTCCGGCGGCGGCGGCGGTGGCGGCGGAGTCAACAGTGGTCGTATTCAGCTCTTGACTGACTCCGGCAAGAAGGTTTTTGCTACACCAGATAAGCTGTTCCCGCGGGATGCGGATGAAGAAGAGCATGGTGGAGTTGAAGACATGACTAGGCTGGTTTACTTGAATGAGCCAGGGGTGTTGTACAATCTTCGAAGGAGATATGCTCTCAATGATATCTATACTTATACAGGAAGCATTTTAATAGCTGTTAATCCCTTTACAAAGCTTCCTCATTTGTATGAAATCCATATGATGGAGCAGTATAAAGGAGCTCCATTCGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCAGATGCATCTTATAGGGCAATGATGAGTGAAGGTAAAAGTCAGTCTATCTTGGTAAGCGGTGAAAGTGGTGCTGGGAAAACTGAGACAACAAAATTAATTATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTGGAATCAAATCCACTTTTAGAGGCATTTGGTAATGCAAGGACAGTCAGAAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAGTGGTAGAATATCTGGTGCTGCAATTAGAACATACTTATTGGAAAGATCACGAGTAGTGCAGATAACGGATCCAGAAAGAAATTATCACTGTTTTTATCAGTTGTGTGCATCTGAAAGGGATGCAGAAATGTATAAGCTAGGACATCCAAGCCACTTCCACTATTTAAATCAAAGTAAAATCTATGAACTTGATGGTGAAGCCATATTTCGTGTCTTAGCTGCGATTTTACATTTGGGAAATATTGAATTTTCTCCTGGAAAAGAGCATGACTCGTCAGCGGTAACAGATGACAAATCAAGATTTCATATGCAGATGGCTGCTGAGCTTTTCATGTGCGATGTAGAGCTACTGCTAGCAACATTGTGTACTCGGTCGATACAAACCCGAGAGGGAAATATAATTAAAGCTCTTGATTGTAATGCTGCTGTTGCTGGACGGGATGCTTTGGCAAAAACGGTTTATGCTAGTTTATTTGATTGGCTTGTTGATAAGATCAATAGGTCTGTTGGTCAAGATAGAAATTCCCAGATTCAAATCGGAGTATTGGATATCTATGGTTTTGAATGCTTTAAGGATAATAGTTTTGAGCAATTCTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAGATGGAGCAGGAAGAGTATGGAAGAGAAGAAATAAACTGGAGTTACATTGAATTTGTGGACAACCAAGATGTGTTAGATTTGATTGAGAAGGTTACATATCACACAGATTCCTTCTTAGACAAAAATCGTGATTATGTTGTAGTAGAACACTGTAATCTATTATCTTCTTCAAAATGCCCCTTTGTGTCTGGTCTTTTTCCTTTGCTACCAGAGGAATCGTCAAGATCATCTTACAAGTTTTCATCTGTGGCATCCAGATTTAAGCAACAACTTCAAGCTCTTATGGAGACCCTTAAATCAACAGAGCCTCATTACATACGATGCGTGAAGCCAAATTCTTTGAACCGACCACAAAAGTTTGAGAATTCCAGTGTCATACACCAATTGCGATGTGGGGGTGTCCTTGAAGCTGTTCGTATAAGCCTAGCTGGTTACCCTACACGAAGGACTTATTCAGATTACGATGATAAAGTTGCAACTGAGAGAATTCTGAAAAAGCTCAACCTTGACAACTTTCAGTTGGGTAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCATTTTAGACTCCAGACGTGCTGAGGTTCTGGACAATGCTGCTAAACGTATTCAACGGCGGCTGAGGACATTTATTTTACACAGGGAATTCATCTCACTCAGAGCTGCTGCAGTTTCAATTCAGTCATGCTGCAGGGGGTGCATTGCTCGAAAGATTTACGTTGCTAAAAGGGAGACAGCTGCGGCGATCTCCATTCAGAAATACATTCGCATGTGTCTAAAGAGGTGTGCTTACTTGGAACTATGTTCATCTGCTGTCATCATTCAGTCACATGTCCGAGGCTTCACAACTCGAGAAAGATTCTTGCATGGAAAGGAGCATAGAGCTGCTACTGTTATTCAGGCATATTGGAGGATGTCCAAGGTTAGGTCAGCTTTCAAACAACATCAAGCTTCTGTTGTGGCAATACAATGCCTTTGGCGGCGTAAACAAGCTAAAAGAGAGCTTCGGAGACTTAAGCGAGAGGCTAATGAGGCTGGTGCTCTCCGTTTAGCTAAGAGTAAACTTGAGAAGCAATTGGACGAGCTGACATGGCGATTGCATCTTGAAAAGAAAATGAGGGGTTCGAATGAAGAGTCTAAGCAAATGGAGATTTCCAAACTTAAAAAGATGTTAGAAGCTTTGAATCTTGAATTAGATGCAGCTAAATTGGATTCTTTGAGTGCCTTCGAAAAGAAGTACACAAATTTGGAACTTGAACTCATGAATGCTCAAAAAGGCCGTAATGAAATGGTTGAGAAACTGAGAGAGTTTGAACAGAAGTGTTCTCAACTGGAGCAAAGTGTGAAGAGCCTTGAGGGGAAGATATTGAATTTAGAGGAAGAAAATCATGTGCTACGTCAGAAAGCCTTAAGTGCTGCTCCTAAGAGTAACCGTTCAGGGCTTGCAAAGTCATTGTCAGAGAAATATTCTAGTGTAATTGCCACCCGTACTGAACGAAAGCCCGTATATGAGTCACCCACACCCACAAAACTTATTGCTCCCTTTACGTCAGGCTTGACAGACTCTCGTCGTCCTAGGTTAACAGCAGAGAAACACCAGGATAACTATGAATTTCTTTCTAGTTGTATCAAAGAAAATTTGGGATTTAAAAACGGTAAACCTCTGGCAGCTCGTATCATTTACAAATGTCTTCTTCAGTGGCATGCCTTCGAATCTGAGCGCACAGCTATTTTTGATTACATAATTGAAGGCATAAATGATGTTTTAAAGGTTAAGGATAATGGTTCTGTATTGCCATATTGGCTTTCAAATGCATCTGCGCTGCTCTGCCTGTTACAGAGAAACGTACGTTCAAATGGATTTTTAACTCCCACTGCTCATCGTCATACGGGATCTTCTGGTTTCAACAGCCGTTTAGGCCATGGACCAAAATCACCGATGAAGCTTATTGGATATGATGATGGTTTTTCACATGTGGAGGCGAGATACCCGGCTATACTTTTTAAACAACAGATCACTGCTTGTGTAGAGAAAATTTTTGGTCTTATAAGAGATAATTTAAAAAGGGAACTCTCCCCTCTTCTTGGGCTATGTATTCAGGCACCCAAAGCGGGACGGCCCCTTGGTGGAAAGTCAACCAGATCTCCAGGTACACCACCTCAACAATCATCTGGTGGTCAATGGGACAATATTGTCAAATTCTTGGATGCACTCATGAGCCAACTTCGTGAAAACCATGTGCCTTCCTTCTTCATCCGCAAGCTAGTTACCCAGGTCTTTTCCTTCATCAATATTACCCTTTTTAACAGTCTTCTCTTGCGGCGTGAATGTTGCACATTCTCGAACGGTGAGTATGTGAAGTCTGGTCTAGCAGAATTGGAGAAGTGGATAGGCAATGCAACAGAGGAGTATGCAGGAACATCTTGGCATGAGCTTAATTATATAAGACAAGCTGTTGGCTTCTTGGTAATACATCAGAAGAGGAGGAAATCTTTGGAAGAGATTTGCCAAGATCTTTGCCCGGTACTGACAGTGAGGCAGATCTATCGAATCAGCACTATGTACTGGGACGACAAGTATTCAACCCAGAGTGTATCCAATGAGGCAAGTTGTGTTTAA 3969 0.4165 MSFRKGAKVWVQDRLDAWLPAEVVDSGGGGGGGGVNSGRIQLLTDSGKKVFATPDKLFPRDADEEEHGGVEDMTRLVYLNEPGVLYNLRRRYALNDIYTYTGSILIAVNPFTKLPHLYEIHMMEQYKGAPFGELSPHVFAVADASYRAMMSEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSSGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDAEMYKLGHPSHFHYLNQSKIYELDGEAIFRVLAAILHLGNIEFSPGKEHDSSAVTDDKSRFHMQMAAELFMCDVELLLATLCTRSIQTREGNIIKALDCNAAVAGRDALAKTVYASLFDWLVDKINRSVGQDRNSQIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGREEINWSYIEFVDNQDVLDLIEKVTYHTDSFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLPEESSRSSYKFSSVASRFKQQLQALMETLKSTEPHYIRCVKPNSLNRPQKFENSSVIHQLRCGGVLEAVRISLAGYPTRRTYSDYDDKVATERILKKLNLDNFQLGRTKVFLRAGQIGILDSRRAEVLDNAAKRIQRRLRTFILHREFISLRAAAVSIQSCCRGCIARKIYVAKRETAAAISIQKYIRMCLKRCAYLELCSSAVIIQSHVRGFTTRERFLHGKEHRAATVIQAYWRMSKVRSAFKQHQASVVAIQCLWRRKQAKRELRRLKREANEAGALRLAKSKLEKQLDELTWRLHLEKKMRGSNEESKQMEISKLKKMLEALNLELDAAKLDSLSAFEKKYTNLELELMNAQKGRNEMVEKLREFEQKCSQLEQSVKSLEGKILNLEEENHVLRQKALSAAPKSNRSGLAKSLSEKYSSVIATRTERKPVYESPTPTKLIAPFTSGLTDSRRPRLTAEKHQDNYEFLSSCIKENLGFKNGKPLAARIIYKCLLQWHAFESERTAIFDYIIEGINDVLKVKDNGSVLPYWLSNASALLCLLQRNVRSNGFLTPTAHRHTGSSGFNSRLGHGPKSPMKLIGYDDGFSHVEARYPAILFKQQITACVEKIFGLIRDNLKRELSPLLGLCIQAPKAGRPLGGKSTRSPGTPPQQSSGGQWDNIVKFLDALMSQLRENHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATEEYAGTSWHELNYIRQAVGFLVIHQKRRKSLEEICQDLCPVLTVRQIYRISTMYWDDKYSTQSVSNEASCV 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272281g00001 1322 CDD MyosinXI_CBD 980 1318 IPR037975 GO:0007015
Stsc272281g00001 1322 ProSiteProfiles IQ motif profile. 742 771 IPR000048 GO:0005515
Stsc272281g00001 1322 ProSiteProfiles IQ motif profile. 719 746 IPR000048 GO:0005515
Stsc272281g00001 1322 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Stsc272281g00001 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 693 IPR027417 -
Stsc272281g00001 1322 Coils Coil 827 854 - -
Stsc272281g00001 1322 Coils Coil 856 918 - -
Stsc272281g00001 1322 ProSiteProfiles Myosin motor domain profile. 68 643 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PANTHER MYOSIN 60 479 - -
Stsc272281g00001 1322 Gene3D - 644 694 - -
Stsc272281g00001 1322 Gene3D - 695 742 - -
Stsc272281g00001 1322 Gene3D - 743 793 - -
Stsc272281g00001 1322 SMART DIL_2 1204 1311 IPR002710 -
Stsc272281g00001 1322 Gene3D Myosin VI head, motor domain, U50 subdomain 301 426 - -
Stsc272281g00001 1322 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 62 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 ProSiteProfiles IQ motif profile. 669 698 IPR000048 GO:0005515
Stsc272281g00001 1322 Pfam DIL domain 1205 1308 IPR002710 -
Stsc272281g00001 1322 Gene3D - 427 479 - -
Stsc272281g00001 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 739 IPR027417 -
Stsc272281g00001 1322 Gene3D - 594 641 - -
Stsc272281g00001 1322 Pfam Myosin head (motor domain) 70 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 Pfam Myosin head (motor domain) 479 630 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PRINTS Myosin heavy chain signature 410 438 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PRINTS Myosin heavy chain signature 155 180 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PRINTS Myosin heavy chain signature 98 117 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PRINTS Myosin heavy chain signature 463 491 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 PRINTS Myosin heavy chain signature 202 229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 ProSiteProfiles Dilute domain profile. 1029 1322 IPR002710 -
Stsc272281g00001 1322 MobiDBLite consensus disorder prediction 1156 1177 - -
Stsc272281g00001 1322 SMART MYSc_2a 62 644 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272281g00001 1322 SMART iq_5 716 738 IPR000048 GO:0005515
Stsc272281g00001 1322 SMART iq_5 764 786 IPR000048 GO:0005515
Stsc272281g00001 1322 SMART iq_5 693 715 IPR000048 GO:0005515
Stsc272281g00001 1322 SMART iq_5 668 690 IPR000048 GO:0005515
Stsc272281g00001 1322 SMART iq_5 741 763 IPR000048 GO:0005515
Stsc272281g00001 1322 SMART iq_5 645 667 IPR000048 GO:0005515
Stsc272281g00001 1322 Gene3D Kinesin motor domain 519 593 IPR036961 -
Stsc272281g00001 1322 Gene3D Kinesin motor domain 8 300 IPR036961 -
Stsc272281g00001 1322 Coils Coil 771 808 - -
Stsc272281g00001 1322 Pfam IQ calmodulin-binding motif 695 714 IPR000048 GO:0005515
Stsc272281g00001 1322 Pfam IQ calmodulin-binding motif 720 737 IPR000048 GO:0005515
Stsc272281g00001 1322 Pfam IQ calmodulin-binding motif 670 689 IPR000048 GO:0005515
Stsc272281g00001 1322 Pfam IQ calmodulin-binding motif 743 763 IPR000048 GO:0005515
Stsc272281g00001 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 792 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272281g00001 Stsc-Chr272281 19056 35989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272281g00001 1 1318 Myosins gene family AT4G33200 64.379 0.0 1849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272281g00001 K10357 - mnt:21401575 1971.05