Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272279g00006 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCAGCTGGCCCACACAGTAACAACAGCAAAGAAGAAGCAGAAGAAAGAGTAGAAAAGCATCATCATCATCATCAAGATAGCAGCAGCCTATTCTTGTTCAGGAACAACGAGGAGGTGTACAACAACAAGGCAGGAGGAGGATTCGAGATATGGCCGCAGCCCTACCATCAAAACCAACAAGGTTTGAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTAGTAATCATCATCATAGAAGGAACAACAACAACAACAACGATAACTCCAACAACAACTCTAACGACGAAGACGTCTCCTTCTGTGTCTCTGATGAGTCGACGCGATTTGGATTGACGGTGATGAGGTCGTCCTCCGGTGGTGGTGGTGGTGGCGGCGGCGTGAACTGCCAGGACTGCGGGAACCAAGCAAAGAAAGACTGTGCTCACCTTCGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTGAAGAGCACGTGGGTTCCCGCTGCAAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCACCGTTCAGACACTTGTTCTAAACGACACAGAGATGCTCAACAAGCTCTTGACTCTCTTCCTTGCCCTCCTCCTGTTCCCACCATCACCACCACAGGGTTGGAGCTGGGTCAATTCCCTACGGAAGTAAGCTCTTCAGCGGTGTTTAGGTGTGTGAAAGTGAGCGCAATAGACAGTGCAGATGAACAGTATGCATATCAAACCGCTGTCAACATCGGAGGCCATCTTTTCAAGGGAATTCTCTACGATCAAGGTCCCCAAGGAGCTTACACTACTACCGTTGTTGCCGAGGGTTCTTCGGGTGGAGGAGGAAGAGGAGGAGCTGAGCCTCATCATCATCAACAACAACTCAGCCTCATAACAGCTGCAACCACCACCACATCTGGAAACCCCTTTGAGCCTTCTTCGCTTTACCCGGCTCCCCTCAACGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGGTCCTAA 1047 0.5129 MAGFFSLGGRGAAGPHSNNSKEEAEERVEKHHHHHQDSSSLFLFRNNEEVYNNKAGGGFEIWPQPYHQNQQGLSNYYSFGVGPSSNHHHRRNNNNNNDNSNNNSNDEDVSFCVSDESTRFGLTVMRSSSGGGGGGGGVNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALHRSDTCSKRHRDAQQALDSLPCPPPVPTITTTGLELGQFPTEVSSSAVFRCVKVSAIDSADEQYAYQTAVNIGGHLFKGILYDQGPQGAYTTTVVAEGSSGGGGRGGAEPHHHQQQLSLITAATTTTSGNPFEPSSLYPAPLNAFMAGTQFFPPPRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272279g00006 348 MobiDBLite consensus disorder prediction 19 39 - -
Stsc272279g00006 348 MobiDBLite consensus disorder prediction 1 42 - -
Stsc272279g00006 348 MobiDBLite consensus disorder prediction 73 108 - -
Stsc272279g00006 348 MobiDBLite consensus disorder prediction 288 307 - -
Stsc272279g00006 348 Pfam Domain of unknown function (DUF702) 137 278 - -
Stsc272279g00006 348 NCBIfam putative zinc finger domain, LRP1 type 139 181 IPR006510 -
Stsc272279g00006 348 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 334 IPR007818 GO:0003700|GO:0006355
Stsc272279g00006 348 NCBIfam LRP1 C-terminal domain 229 277 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272279g00006 Stsc-Chr272279 36611 39076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272279g00006 1 348 C2H2 Transcription Factor Family AT1G75520 42.677 3.26e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc272279g00006 DUF702 3.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272279g00006 - - lja:Lj5g3v0155490.1 362.073